Variant report

Variant	rs17636663
Chromosome Location	chr1:217208750-217208751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11572415	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs11572427	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11572435	0.94[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11577589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11585218	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11585774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12723476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724974	0.94[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731437	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12738035	0.94[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12741457	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12747869	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12750129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756498	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759546	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12759584	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17044977	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17635718	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs17686743	0.94[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17686866	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1890555	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34056739	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34096624	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34493634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34904258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35185630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35409092	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35701761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846800	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4846801	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6681177	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6684076	0.80[CEU][hapmap];0.84[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71643439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1006155	chr1:217157000-217215465	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217199600-217211800	Weak transcription	Gastric	stomach
2	chr1:217204000-217212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:217204200-217209800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:217204800-217226000	Weak transcription	Fetal Kidney	kidney
5	chr1:217205400-217209600	Weak transcription	Fetal Intestine Small	intestine
6	chr1:217206800-217214200	Weak transcription	Fetal Heart	heart

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