Variant report

Variant	rs11572653
Chromosome Location	chr1:216922613-216922614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12737688	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12757183	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339352	0.92[JPT][hapmap]
rs1416620	0.88[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs2813704	0.92[JPT][hapmap]
rs34000440	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35539124	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs871557	0.92[JPT][hapmap]
rs946475	0.84[JPT][hapmap]
rs956543	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216919000-216922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:216921600-216923000	Enhancers	Fetal Stomach	stomach
6	chr1:216921600-216925000	Enhancers	Fetal Heart	heart
7	chr1:216922000-216922800	Enhancers	Ovary	ovary
8	chr1:216922000-216923000	Enhancers	Fetal Muscle Leg	muscle
9	chr1:216922400-216925400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:216922400-216931400	Weak transcription	Right Atrium	heart
11	chr1:216922600-216922800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:216922600-216923000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr1:216922600-216923800	Enhancers	Brain Anterior Caudate	brain
14	chr1:216922600-216925400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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