Variant report

Variant	rs11573041
Chromosome Location	chr4:57948316-57948317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:57947814..57949862-chr4:57955509..57958047,2	MCF-7	breast:
2	chr4:57947462..57949584-chr4:57951331..57953950,2	K562	blood:
3	chr4:57943158..57945422-chr4:57946459..57948764,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10016108	1.00[CHB][hapmap]
rs11133472	1.00[CHB][hapmap]
rs11573128	1.00[CHB][hapmap]
rs11732394	1.00[CHB][hapmap]
rs13125082	1.00[CHB][hapmap]
rs13146090	1.00[CHB][hapmap]
rs13146153	1.00[CHB][hapmap]
rs1618761	1.00[CHB][hapmap]
rs17087358	1.00[CHB][hapmap]
rs17183291	1.00[CHB][hapmap]
rs1718846	1.00[CHB][hapmap]
rs1718848	1.00[CHB][hapmap]
rs4109037	1.00[CHB][hapmap]
rs41495551	1.00[CHB][hapmap]
rs4865176	1.00[CHB][hapmap]
rs4865177	1.00[CHB][hapmap]
rs7656865	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57934400-57951600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:57938000-57955800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:57939800-57949800	Enhancers	HMEC	breast
4	chr4:57942800-57960400	Weak transcription	Psoas Muscle	Psoas
5	chr4:57943200-57950000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:57943800-57948600	Enhancers	HSMM	muscle
7	chr4:57943800-57950200	Enhancers	NHLF	lung
8	chr4:57944000-57948400	Enhancers	Fetal Stomach	stomach
9	chr4:57944400-57964000	Weak transcription	Fetal Thymus	thymus
10	chr4:57944800-57950000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:57945000-57950000	Enhancers	NHDF-Ad	bronchial
12	chr4:57945200-57958000	Weak transcription	Gastric	stomach
13	chr4:57945200-57960400	Weak transcription	Pancreas	Pancrea
14	chr4:57945400-57948400	Enhancers	HepG2	liver
15	chr4:57945400-57948600	Enhancers	Brain Hippocampus Middle	brain
16	chr4:57945400-57948800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:57945400-57950000	Enhancers	NHEK	skin
18	chr4:57945600-57948400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:57945600-57948600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:57945600-57948600	Enhancers	Colon Smooth Muscle	Colon
21	chr4:57945600-57948800	Enhancers	Fetal Kidney	kidney
22	chr4:57945800-57948600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:57946000-57948400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:57946000-57950000	Enhancers	Left Ventricle	heart
25	chr4:57946200-57948600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:57946200-57949200	Enhancers	Right Atrium	heart
27	chr4:57946400-57948400	Weak transcription	Fetal Intestine Small	intestine
28	chr4:57946600-57948400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:57946600-57949800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:57946600-57950800	Genic enhancers	NH-A	brain
31	chr4:57946800-57948400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:57946800-57948400	Enhancers	Hela-S3	cervix
33	chr4:57946800-57949200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr4:57946800-57950000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:57946800-57950000	Enhancers	Adipose Nuclei	Adipose
36	chr4:57946800-57950000	Enhancers	Ovary	ovary
37	chr4:57947000-57948400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:57947000-57948400	Enhancers	Rectal Smooth Muscle	rectum
39	chr4:57947000-57948400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr4:57947000-57950000	Enhancers	HSMMtube	muscle
41	chr4:57947200-57948600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:57947200-57949000	Weak transcription	Small Intestine	intestine
43	chr4:57947200-57949600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:57947200-57950600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:57947200-57958000	Weak transcription	Aorta	Aorta
46	chr4:57947400-57949000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:57947400-57950000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:57947800-57948400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr4:57947800-57948400	Flanking Active TSS	A549	lung
50	chr4:57947800-57948600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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