Variant report

Variant	rs11573128
Chromosome Location	chr4:57898230-57898231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10016108	1.00[CHB][hapmap]
rs11133472	1.00[CHB][hapmap]
rs11573041	1.00[CHB][hapmap]
rs11732394	1.00[CHB][hapmap]
rs13125082	1.00[CHB][hapmap]
rs13146090	1.00[CHB][hapmap]
rs13146153	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs1618761	1.00[CHB][hapmap]
rs17087358	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs17183291	1.00[CHB][hapmap]
rs1718846	1.00[CHB][hapmap]
rs1718848	1.00[CHB][hapmap]
rs35460070	0.82[AMR][1000 genomes]
rs4109037	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs41495551	1.00[CHB][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs4865176	1.00[CHB][hapmap]
rs4865177	1.00[CHB][hapmap]
rs56296916	0.84[AMR][1000 genomes]
rs7656865	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11573128	IGFBP7	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57846800-57900000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:57848600-57900000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:57849000-57900000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:57850600-57899400	Strong transcription	Fetal Thymus	thymus
5	chr4:57850800-57899400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:57851000-57899200	Strong transcription	Primary T cells from cord blood	blood
7	chr4:57851000-57899400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr4:57851600-57899400	Strong transcription	Placenta	Placenta
9	chr4:57851800-57899400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:57851800-57899400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:57851800-57899400	Strong transcription	Liver	Liver
12	chr4:57851800-57899600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:57852200-57899000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:57852200-57899400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:57852600-57899400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:57856000-57899400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:57856800-57900000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr4:57858200-57899800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr4:57858400-57899800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:57858400-57899800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:57859400-57898600	Strong transcription	Dnd41	blood
22	chr4:57860200-57898800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:57862200-57899400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:57862200-57900000	Strong transcription	Fetal Muscle Leg	muscle
25	chr4:57863400-57907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:57870400-57899800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr4:57870600-57899000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr4:57871000-57899600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:57879400-57899800	Strong transcription	Fetal Kidney	kidney
30	chr4:57883200-57899600	Strong transcription	Primary hematopoietic stem cells	blood
31	chr4:57887000-57900000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:57887000-57900200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:57887200-57899800	Strong transcription	Adipose Nuclei	Adipose
34	chr4:57887200-57900000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:57887400-57900400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:57888000-57898800	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr4:57889000-57910200	Weak transcription	Esophagus	oesophagus
38	chr4:57889600-57899400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:57889800-57899600	Strong transcription	HMEC	breast
40	chr4:57889800-57899800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:57889800-57900000	Strong transcription	HSMMtube	muscle
42	chr4:57889800-57900000	Strong transcription	HUVEC	blood vessel
43	chr4:57890000-57900000	Strong transcription	NHEK	skin
44	chr4:57890000-57903000	Strong transcription	HSMM	muscle
45	chr4:57890200-57901000	Strong transcription	NH-A	brain
46	chr4:57890400-57900000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr4:57890400-57900000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:57890400-57900600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:57890400-57903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:57890400-57905600	Strong transcription	Osteobl	bone

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