Variant report

Variant	rs11574923
Chromosome Location	chr4:15838962-15838963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11574927	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13104011	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13124795	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13136498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143035	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13147551	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16892403	0.83[ASN][1000 genomes]
rs17408310	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17408338	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34324179	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34762270	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36125685	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3756242	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3796864	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3796868	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698121	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698122	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4698123	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4698418	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698419	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698421	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4698422	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57904440	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60090018	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62290649	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6815245	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6816486	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71601499	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7655635	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637595	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
3	chr4:15811800-15842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:15812200-15840000	Strong transcription	Dnd41	blood
5	chr4:15819200-15853400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:15820600-15842200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:15820600-15844400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:15821200-15841600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:15827600-15841600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:15827600-15841800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:15827600-15853400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:15830000-15843200	Strong transcription	Primary B cells from cord blood	blood
13	chr4:15833200-15843200	Strong transcription	Fetal Thymus	thymus
14	chr4:15834000-15842200	Strong transcription	Thymus	Thymus
15	chr4:15834200-15843200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:15834600-15844400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:15834800-15841600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:15834800-15842200	Weak transcription	Left Ventricle	heart
19	chr4:15834800-15851800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:15834800-15852800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:15835000-15857400	Weak transcription	Psoas Muscle	Psoas
22	chr4:15836400-15840800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:15836400-15842200	Weak transcription	GM12878-XiMat	blood
24	chr4:15836600-15841600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:15837800-15839000	Strong transcription	Primary T cells from cord blood	blood
26	chr4:15838200-15843200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:15838800-15840400	Strong transcription	Monocytes-CD14+_RO01746	blood

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