Variant report

Variant	rs16892403
Chromosome Location	chr4:15772644-15772645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15481667..15484454-chr4:15772642..15775403,2	MCF-7	breast:
2	chr4:15771423..15774001-chr4:15776022..15777670,2	K562	blood:
3	chr4:15745915..15748047-chr4:15772262..15775120,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11574923	0.83[ASN][1000 genomes]
rs11574927	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs13104011	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13124795	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13136498	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13143035	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13147551	0.94[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17408310	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17408338	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34252100	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34324179	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34747980	0.94[ASN][1000 genomes]
rs34762270	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36125685	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3756242	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3796864	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3796868	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698121	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698122	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4698123	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4698418	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698419	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698421	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698422	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs57904440	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60090018	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62290649	0.84[ASN][1000 genomes]
rs6815245	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6816486	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71601499	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7655635	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7678866	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9637595	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2760884	chr4:15759680-15776181	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15764800-15775800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:15767200-15779400	Weak transcription	Spleen	Spleen
3	chr4:15768200-15775200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:15768200-15777200	Enhancers	Fetal Thymus	thymus
5	chr4:15768400-15772800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:15768800-15773400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:15768800-15774800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:15769000-15772800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:15769000-15772800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:15769000-15773400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:15769200-15778600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:15769800-15773400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:15770000-15773000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:15770600-15772800	Genic enhancers	Dnd41	blood
15	chr4:15771000-15772800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:15771200-15772800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:15771200-15773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:15771200-15773200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:15771200-15779400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:15772400-15772800	Weak transcription	Psoas Muscle	Psoas
21	chr4:15772400-15773400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:15772400-15773600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr4:15772400-15773800	Flanking Active TSS	GM12878-XiMat	blood
24	chr4:15772400-15774400	Enhancers	Primary hematopoietic stem cells	blood
25	chr4:15772400-15775800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:15772400-15776000	Enhancers	Thymus	Thymus
27	chr4:15772400-15776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:15772400-15776600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:15772600-15772800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
30	chr4:15772600-15773400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:15772600-15774400	Enhancers	Primary T cells from cord blood	blood
32	chr4:15772600-15774600	Enhancers	Primary T helper cells fromperipheralblood	blood

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