Variant report

Variant	rs11575525
Chromosome Location	chr7:50534620-50534621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11575332	0.82[AFR][1000 genomes]
rs11575339	0.82[AFR][1000 genomes]
rs11575368	0.82[AFR][1000 genomes]
rs11575374	0.82[AFR][1000 genomes]
rs11575378	0.82[AFR][1000 genomes]
rs11575437	0.82[AFR][1000 genomes]
rs11575515	1.00[YRI][hapmap]
rs6262	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1026081	chr7:50525900-50538184	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50518800-50535400	Weak transcription	Pancreas	Pancrea
2	chr7:50518800-50535600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:50518800-50535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:50518800-50535600	Weak transcription	HepG2	liver
5	chr7:50528800-50535400	Weak transcription	Colonic Mucosa	Colon
6	chr7:50529200-50535600	Strong transcription	Fetal Intestine Large	intestine
7	chr7:50529600-50535400	Strong transcription	Fetal Intestine Small	intestine
8	chr7:50530400-50535400	Weak transcription	HUVEC	blood vessel
9	chr7:50531000-50535400	Weak transcription	Hela-S3	cervix
10	chr7:50532200-50535400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:50532400-50535400	Weak transcription	Gastric	stomach
12	chr7:50532800-50535600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:50533200-50535400	Weak transcription	Liver	Liver
14	chr7:50533800-50535600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:50534400-50535600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:50534600-50535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:50534600-50535600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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