Variant report

Variant	rs11576593
Chromosome Location	chr1:71394480-71394481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11587601	0.84[EUR][1000 genomes]
rs12066813	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12067177	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12067214	0.94[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12097924	0.94[CHB][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12407552	0.85[EUR][1000 genomes]
rs13374231	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17090700	0.89[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1883459	0.83[CHB][hapmap]
rs2072946	0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs2300161	0.89[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2300164	0.83[CHB][hapmap]
rs2421735	0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3819783	0.83[CHB][hapmap];0.82[TSI][hapmap]
rs3819790	0.88[CHB][hapmap]
rs5697	0.89[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs6670616	0.94[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7516479	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7541717	0.94[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs926457	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9424956	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9424958	0.83[CHB][hapmap]
rs9425049	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv461840	chr1:71364105-71468493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv546471	chr1:71364105-71468493	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1002663	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv534987	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv871313	chr1:71391646-71489438	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71394400-71397200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links