Variant report

Variant	rs1157775
Chromosome Location	chr4:106565931-106565932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106557959..106560192-chr4:106563157..106566031,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10019217	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10030620	0.85[ASN][1000 genomes]
rs10049527	1.00[CHB][hapmap]
rs10516522	0.86[CHB][hapmap]
rs11930244	0.86[CHB][hapmap]
rs11930965	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11942577	0.86[CHB][hapmap]
rs11946652	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12504088	0.86[CHB][hapmap]
rs12512339	0.81[ASN][1000 genomes]
rs13110070	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13145251	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17036093	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs17036097	0.86[CHB][hapmap]
rs17036102	0.86[CHB][hapmap]
rs17036254	0.86[CHB][hapmap]
rs2193852	0.86[CHB][hapmap]
rs2193854	0.86[CHB][hapmap]
rs28698939	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698950	0.86[EUR][1000 genomes]
rs4698951	0.86[CHB][hapmap]
rs4699192	0.85[ASN][1000 genomes]
rs4699193	0.82[CHB][hapmap]
rs4699194	0.85[CHB][hapmap]
rs4699197	0.86[CHB][hapmap]
rs4699198	0.86[CHB][hapmap]
rs4699199	0.86[CHB][hapmap]
rs56849622	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58914657	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6817029	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6820671	0.86[CHB][hapmap]
rs6825379	0.86[CHB][hapmap]
rs7658055	0.86[CHB][hapmap]
rs7659526	0.86[CHB][hapmap]
rs7696836	0.85[ASN][1000 genomes]
rs989775	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:106565200-106566000	Enhancers	NHEK	skin
8	chr4:106565600-106566000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:106565600-106566000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106565800-106566800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:106565800-106573200	Weak transcription	Fetal Lung	lung

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