Variant report

Variant	rs6825379
Chromosome Location	chr4:106704166-106704167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10019217	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10049527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516522	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs11930244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11930965	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs11936611	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942577	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12504088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12511885	0.87[ASN][1000 genomes]
rs17036093	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17036097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17036102	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17036158	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17036254	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2193853	0.90[ASN][1000 genomes]
rs2193854	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2216514	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28370551	0.82[ASN][1000 genomes]
rs28391170	0.82[ASN][1000 genomes]
rs28450989	0.82[ASN][1000 genomes]
rs28559909	0.80[ASN][1000 genomes]
rs3796926	0.82[ASN][1000 genomes]
rs4490460	0.82[ASN][1000 genomes]
rs4698951	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4699193	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs4699194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs4699195	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs4699198	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4699199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57623715	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58388061	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59961848	0.87[ASN][1000 genomes]
rs60774107	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60861135	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6817029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6820671	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6826631	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829915	0.88[ASN][1000 genomes]
rs6843771	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659526	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7665588	0.90[ASN][1000 genomes]
rs7697619	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106688400-106708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:106689400-106706000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:106690800-106706000	Weak transcription	Fetal Heart	heart
4	chr4:106691400-106706400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106694000-106718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:106694600-106704200	Weak transcription	HepG2	liver
8	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:106697200-106725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:106697800-106704200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:106697800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:106698000-106725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:106698200-106719200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:106701000-106707400	Weak transcription	NHLF	lung
15	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:106703600-106704400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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