Variant report

Variant	rs11936611
Chromosome Location	chr4:106732359-106732360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10049527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516522	0.82[ASN][1000 genomes]
rs11930244	0.89[ASN][1000 genomes]
rs11930965	0.82[ASN][1000 genomes]
rs11942577	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12504088	0.87[ASN][1000 genomes]
rs12511885	0.87[ASN][1000 genomes]
rs17036093	0.80[ASN][1000 genomes]
rs17036097	0.80[ASN][1000 genomes]
rs17036102	0.82[ASN][1000 genomes]
rs17036158	0.90[ASN][1000 genomes]
rs17036254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193852	0.90[ASN][1000 genomes]
rs2193853	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2193854	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2216514	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28370551	0.82[ASN][1000 genomes]
rs28391170	0.82[ASN][1000 genomes]
rs28450989	0.82[ASN][1000 genomes]
rs28559909	0.80[ASN][1000 genomes]
rs3796926	0.82[ASN][1000 genomes]
rs4490460	0.82[ASN][1000 genomes]
rs4698951	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4699193	0.82[ASN][1000 genomes]
rs4699194	0.82[ASN][1000 genomes]
rs4699195	0.82[ASN][1000 genomes]
rs4699197	0.82[ASN][1000 genomes]
rs4699198	0.82[ASN][1000 genomes]
rs4699199	0.90[ASN][1000 genomes]
rs57623715	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58388061	0.87[ASN][1000 genomes]
rs59961848	0.87[ASN][1000 genomes]
rs60774107	0.85[ASN][1000 genomes]
rs60861135	0.90[ASN][1000 genomes]
rs6820671	0.82[ASN][1000 genomes]
rs6825379	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829915	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6843771	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659526	0.82[ASN][1000 genomes]
rs7665588	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7697619	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106724200-106736400	Weak transcription	Ovary	ovary
4	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106730400-106732400	Weak transcription	HMEC	breast
7	chr4:106730400-106738800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
9	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
10	chr4:106730800-106736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:106730800-106761800	Weak transcription	HSMM	muscle
12	chr4:106732200-106732600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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