Variant report

Variant	rs7665588
Chromosome Location	chr4:106682519-106682520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10049527	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10516522	0.92[ASN][1000 genomes]
rs11930244	0.95[ASN][1000 genomes]
rs11930965	0.87[ASN][1000 genomes]
rs11936611	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942577	0.82[ASN][1000 genomes]
rs12504088	0.97[ASN][1000 genomes]
rs12511885	0.97[ASN][1000 genomes]
rs12512339	0.83[ASN][1000 genomes]
rs13145251	0.80[ASN][1000 genomes]
rs17036093	0.90[ASN][1000 genomes]
rs17036097	0.90[ASN][1000 genomes]
rs17036102	0.92[ASN][1000 genomes]
rs17036158	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036254	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2193852	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193853	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193854	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216514	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28370551	0.92[ASN][1000 genomes]
rs28391170	0.92[ASN][1000 genomes]
rs28450989	0.92[ASN][1000 genomes]
rs28559909	0.90[ASN][1000 genomes]
rs3796926	0.92[ASN][1000 genomes]
rs4235415	0.80[ASN][1000 genomes]
rs4490460	0.92[ASN][1000 genomes]
rs4698950	0.85[ASN][1000 genomes]
rs4698951	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699193	0.92[ASN][1000 genomes]
rs4699194	0.92[ASN][1000 genomes]
rs4699195	0.92[ASN][1000 genomes]
rs4699197	0.92[ASN][1000 genomes]
rs4699198	0.92[ASN][1000 genomes]
rs4699199	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57623715	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58388061	0.97[ASN][1000 genomes]
rs58914657	0.80[ASN][1000 genomes]
rs59961848	0.92[ASN][1000 genomes]
rs60774107	0.95[ASN][1000 genomes]
rs60861135	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817029	0.85[ASN][1000 genomes]
rs6820671	0.92[ASN][1000 genomes]
rs6825379	0.90[ASN][1000 genomes]
rs6826631	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6829915	0.82[EUR][1000 genomes]
rs6843771	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7658055	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7659526	0.92[ASN][1000 genomes]
rs7697619	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106659400-106686400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:106661400-106686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:106661400-106686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:106673200-106686600	Weak transcription	GM12878-XiMat	blood
9	chr4:106682000-106687200	Weak transcription	NH-A	brain

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