Variant report

Variant	rs4490460
Chromosome Location	chr4:106619069-106619070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106619010..106621015-chr4:106623731..106625393,2	K562	blood:
2	chr4:106616699..106623307-chr4:106623731..106631342,11	K562	blood:
3	chr4:106617860..106619362-chr4:106629080..106630603,2	K562	blood:
4	chr4:106617458..106619581-chr4:106620004..106623433,3	K562	blood:

Variant related genes	Relation type
ENSG00000236699	Chromatin interaction
ENSG00000138780	Chromatin interaction
ENSG00000138785	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10019217	0.85[ASN][1000 genomes]
rs10030620	0.80[ASN][1000 genomes]
rs10049527	0.82[ASN][1000 genomes]
rs10516522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930244	0.87[ASN][1000 genomes]
rs11930965	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936611	0.82[ASN][1000 genomes]
rs12504088	0.95[ASN][1000 genomes]
rs12511885	0.95[ASN][1000 genomes]
rs12512339	0.90[ASN][1000 genomes]
rs13110070	0.85[ASN][1000 genomes]
rs13145251	0.83[ASN][1000 genomes]
rs17036093	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17036097	0.97[ASN][1000 genomes]
rs17036102	1.00[ASN][1000 genomes]
rs17036158	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036254	0.82[ASN][1000 genomes]
rs2193852	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2193853	0.92[ASN][1000 genomes]
rs28370551	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391170	1.00[ASN][1000 genomes]
rs28450989	1.00[ASN][1000 genomes]
rs28559909	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28698939	0.85[ASN][1000 genomes]
rs3796926	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235415	0.87[ASN][1000 genomes]
rs4698950	0.93[ASN][1000 genomes]
rs4698951	0.92[ASN][1000 genomes]
rs4699192	0.85[ASN][1000 genomes]
rs4699193	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699195	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699197	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699198	1.00[ASN][1000 genomes]
rs4699199	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58388061	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58914657	0.83[ASN][1000 genomes]
rs59961848	0.84[ASN][1000 genomes]
rs60774107	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60861135	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6817029	0.88[ASN][1000 genomes]
rs6820671	1.00[ASN][1000 genomes]
rs6825379	0.82[ASN][1000 genomes]
rs6826631	0.82[ASN][1000 genomes]
rs6843771	0.82[ASN][1000 genomes]
rs7658055	0.82[ASN][1000 genomes]
rs7659526	1.00[ASN][1000 genomes]
rs7665588	0.92[ASN][1000 genomes]
rs7696836	0.85[ASN][1000 genomes]
rs7697619	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106587800-106629000	Weak transcription	Lung	lung
2	chr4:106600400-106628600	Weak transcription	Colonic Mucosa	Colon
3	chr4:106600600-106628400	Weak transcription	Stomach Mucosa	stomach
4	chr4:106601200-106628400	Weak transcription	Psoas Muscle	Psoas
5	chr4:106602200-106621600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:106602200-106629200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:106602400-106621600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr4:106602400-106628600	Weak transcription	Right Ventricle	heart
9	chr4:106602600-106620800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:106602600-106621200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:106602600-106621800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:106602600-106622200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:106602600-106628400	Weak transcription	Fetal Heart	heart
14	chr4:106602600-106629200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:106602800-106619200	Strong transcription	Liver	Liver
16	chr4:106603000-106620200	Strong transcription	Placenta	Placenta
17	chr4:106603000-106620400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:106603000-106620400	Strong transcription	Dnd41	blood
19	chr4:106603000-106621000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:106604400-106629200	Weak transcription	Esophagus	oesophagus
21	chr4:106604400-106629200	Weak transcription	Gastric	stomach
22	chr4:106605400-106621600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:106606600-106620000	Strong transcription	Fetal Thymus	thymus
24	chr4:106606600-106628200	Weak transcription	Hela-S3	cervix
25	chr4:106607600-106626400	Weak transcription	Small Intestine	intestine
26	chr4:106609000-106620600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:106609200-106620000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr4:106609200-106621600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr4:106609200-106625200	Strong transcription	HSMM	muscle
30	chr4:106609400-106621400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr4:106609600-106621200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:106610400-106619200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:106610400-106628800	Weak transcription	Fetal Kidney	kidney
34	chr4:106610600-106619400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:106610600-106628200	Weak transcription	Fetal Brain Male	brain
36	chr4:106610600-106628600	Weak transcription	A549	lung
37	chr4:106610800-106621200	Weak transcription	Brain Substantia Nigra	brain
38	chr4:106610800-106628600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:106611000-106619800	Weak transcription	Left Ventricle	heart
40	chr4:106611400-106623600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:106611400-106627600	Weak transcription	HepG2	liver
42	chr4:106611400-106628600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:106612400-106620200	Strong transcription	Adipose Nuclei	Adipose
44	chr4:106612400-106621200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr4:106612400-106624600	Weak transcription	NHEK	skin
46	chr4:106612600-106619600	Strong transcription	Fetal Lung	lung
47	chr4:106612600-106621800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:106612600-106621800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:106612800-106620600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:106612800-106621600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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