Variant report

Variant rs11578562
Chromosome Location chr1:10727627-10727628
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10698800-10752000 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr1:10707800-10731200 Weak transcription NHEK skin
3 chr1:10711600-10728400 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:10712600-10737000 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr1:10714400-10729200 Weak transcription Primary hematopoietic stem cells blood
6 chr1:10714600-10730200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:10714600-10731400 Weak transcription Small Intestine intestine
8 chr1:10720200-10727800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:10722800-10728000 Bivalent Enhancer Fetal Stomach stomach
10 chr1:10722800-10729000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:10722800-10730000 Enhancers Liver Liver
12 chr1:10722800-10731000 Weak transcription Primary B cells from cord blood blood
13 chr1:10722800-10753000 Weak transcription Primary T cells from cord blood blood
14 chr1:10723000-10728400 Genic enhancers Spleen Spleen
15 chr1:10723200-10727800 Enhancers HSMMtube muscle
16 chr1:10723200-10732200 Enhancers Placenta Placenta
17 chr1:10723200-10734200 Bivalent Enhancer Fetal Muscle Trunk muscle
18 chr1:10724200-10728200 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr1:10724200-10728400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:10724200-10728400 Weak transcription Fetal Kidney kidney
21 chr1:10724200-10728600 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr1:10724200-10734000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:10724200-10743200 Enhancers Fetal Heart heart
24 chr1:10724800-10727800 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:10724800-10728000 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:10724800-10728000 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr1:10724800-10728000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:10724800-10730800 Weak transcription Brain Germinal Matrix brain
29 chr1:10725000-10728200 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:10725200-10728400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:10725200-10730200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:10725400-10728200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:10725400-10730600 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr1:10725600-10727800 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr1:10725600-10728400 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:10725600-10729400 Enhancers Stomach Mucosa stomach
37 chr1:10725600-10729600 Enhancers Left Ventricle heart
38 chr1:10725600-10731400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr1:10725600-10736600 Weak transcription Primary T cells fromperipheralblood blood
40 chr1:10725600-10739200 Weak transcription Thymus Thymus
41 chr1:10725800-10731200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:10725800-10732600 Bivalent Enhancer Fetal Muscle Leg muscle
43 chr1:10726000-10732000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:10726000-10734400 Enhancers Fetal Lung lung
45 chr1:10726200-10729200 Genic enhancers Fetal Intestine Small intestine
46 chr1:10726200-10729200 Enhancers Psoas Muscle Psoas
47 chr1:10726400-10729200 Enhancers Fetal Intestine Large intestine
48 chr1:10726400-10732000 Enhancers Skeletal Muscle Female skeletal muscle
49 chr1:10726400-10741600 Weak transcription Brain Hippocampus Middle brain
50 chr1:10726400-10750000 Weak transcription Primary B cells from peripheral blood blood

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