Variant report

Variant	rs71509069
Chromosome Location	chr1:10902038-10902039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10897062..10899441-chr1:10901795..10903636,2	MCF-7	breast:
2	chr1:10899871..10902996-chr1:10907115..10909537,3	K562	blood:
3	chr1:10899594..10902862-chr1:10958489..10961568,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11578562	1.00[AFR][1000 genomes]
rs12028719	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12030479	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12048262	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12048967	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12142503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12143767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724489	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12724989	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12731652	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617195	1.00[ASN][1000 genomes]
rs1776218	1.00[ASN][1000 genomes]
rs1776219	1.00[ASN][1000 genomes]
rs34217099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34542452	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34593019	1.00[AFR][1000 genomes]
rs34896200	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35126763	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35261279	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35414554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35858703	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047809	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509068	1.00[AFR][1000 genomes]
rs72864610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv871617	chr1:10858746-10935232	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv871155	chr1:10858746-10998509	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1825837	chr1:10887923-11093741	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10883600-10902800	Weak transcription	Right Atrium	heart
2	chr1:10900400-10902800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:10900400-10902800	Enhancers	Fetal Muscle Leg	muscle
4	chr1:10901400-10902800	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:10902000-10910600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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