Variant report

Variant	rs35858703
Chromosome Location	chr1:10895424-10895425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:10882954..10889403-chr1:10891369..10897064,9	MCF-7	breast:
2	chr1:10895281..10897495-chr1:11000321..11002015,2	MCF-7	breast:
3	chr1:10889433..10892912-chr1:10893269..10895457,3	MCF-7	breast:
4	chr1:10887422..10891418-chr1:10892933..10896099,4	K562	blood:
5	chr1:10893753..10896374-chr1:10897751..10899906,2	K562	blood:
6	chr1:10886250..10887868-chr1:10894690..10896395,2	MCF-7	breast:
7	chr1:10888572..10890725-chr1:10893676..10896099,3	K562	blood:
8	chr1:10890948..10893091-chr1:10894513..10897214,2	MCF-7	breast:

No data

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12028719	1.00[AMR][1000 genomes]
rs12030479	1.00[AMR][1000 genomes]
rs12048262	1.00[AMR][1000 genomes]
rs12048967	1.00[AMR][1000 genomes]
rs12142503	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12143767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724489	1.00[AMR][1000 genomes]
rs12724989	1.00[AMR][1000 genomes]
rs12731652	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740860	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617195	1.00[ASN][1000 genomes]
rs1776218	1.00[ASN][1000 genomes]
rs1776219	1.00[ASN][1000 genomes]
rs34217099	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34542452	1.00[AMR][1000 genomes]
rs34896200	1.00[AMR][1000 genomes]
rs35126763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35261279	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35414554	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677622	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047809	1.00[AMR][1000 genomes]
rs71509069	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864610	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871617	chr1:10858746-10935232	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv871155	chr1:10858746-10998509	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1825837	chr1:10887923-11093741	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10883600-10902800	Weak transcription	Right Atrium	heart
2	chr1:10885000-10895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:10889000-10895800	Weak transcription	Pancreas	Pancrea
4	chr1:10893400-10895800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:10893400-10895800	Weak transcription	HMEC	breast
6	chr1:10894400-10895600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:10894600-10896400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:10894800-10895800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:10894800-10895800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr1:10894800-10896400	Bivalent Enhancer	Fetal Brain Male	brain
11	chr1:10895000-10895800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr1:10895000-10896400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:10895000-10896400	Bivalent Enhancer	Fetal Stomach	stomach
14	chr1:10895000-10900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:10895200-10895600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:10895200-10895600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr1:10895200-10895800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:10895200-10895800	Enhancers	Fetal Lung	lung
19	chr1:10895200-10895800	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr1:10895200-10896000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr1:10895200-10896000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:10895200-10896400	Enhancers	Fetal Heart	heart
23	chr1:10895200-10900200	Enhancers	Brain Germinal Matrix	brain
24	chr1:10895400-10895600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr1:10895400-10895600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr1:10895400-10896400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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