Variant report

Variant	rs11578907
Chromosome Location	chr1:185540487-185540488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185528036..185530199-chr1:185540176..185542231,2	MCF-7	breast:
2	chr1:185274392..185277102-chr1:185539346..185541566,2	MCF-7	breast:
3	chr1:185534952..185537044-chr1:185538888..185541072,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116679	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11586605	1.00[AFR][1000 genomes]
rs72727718	1.00[AFR][1000 genomes]
rs72727728	1.00[AFR][1000 genomes]
rs72727749	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185529400-185543000	Weak transcription	Pancreas	Pancrea
2	chr1:185530800-185544000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:185533000-185540800	Enhancers	NHEK	skin
4	chr1:185534800-185543000	Weak transcription	A549	lung
5	chr1:185535000-185543400	Weak transcription	HSMMtube	muscle
6	chr1:185536200-185542000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:185536800-185540600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:185537000-185540600	Enhancers	Primary T cells from cord blood	blood
9	chr1:185537000-185540600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:185537200-185543000	Weak transcription	Small Intestine	intestine
11	chr1:185538000-185541800	Enhancers	Fetal Intestine Large	intestine
12	chr1:185538200-185542000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr1:185538400-185541600	Enhancers	Fetal Intestine Small	intestine
14	chr1:185538600-185542800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:185538800-185542400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:185539000-185540600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:185539000-185542400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:185539400-185541600	Enhancers	Fetal Kidney	kidney
19	chr1:185539600-185540600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:185540000-185540600	Enhancers	HMEC	breast
21	chr1:185540000-185540800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:185540200-185542000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:185540200-185543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:185540400-185540600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:185540400-185540600	Enhancers	Osteobl	bone
26	chr1:185540400-185540800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:185540400-185542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:185540400-185543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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