Variant report

Variant	rs72727749
Chromosome Location	chr1:185601708-185601709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11578907	1.00[AFR][1000 genomes]
rs11586605	1.00[AFR][1000 genomes]
rs72727718	1.00[AFR][1000 genomes]
rs72727728	1.00[AFR][1000 genomes]
rs72727753	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3350575	chr1:185580344-185614213	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185596400-185601800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185600800-185602200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:185601000-185602600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:185601200-185602200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:185601200-185603400	Enhancers	HMEC	breast
6	chr1:185601200-185603800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:185601400-185602000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:185601400-185602600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:185601400-185603000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:185601400-185603000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:185601600-185602800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:185601600-185603600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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