Variant report

Variant	rs11579061
Chromosome Location	chr1:152378564-152378565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152376781..152379524-chr1:152379783..152382787,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10888487	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11205007	0.83[AMR][1000 genomes]
rs1923492	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923497	0.83[AMR][1000 genomes]
rs1923500	0.81[EUR][1000 genomes]
rs1951523	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2146114	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2146115	0.81[AMR][1000 genomes]
rs2146118	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4240876	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4240877	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4240880	0.83[AMR][1000 genomes]
rs4240881	0.80[AMR][1000 genomes]
rs4845432	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4845434	0.86[AMR][1000 genomes]
rs4845763	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561260	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6587669	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6679896	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs941933	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv516541	chr1:152376710-152390452	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152378000-152378600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:152378000-152382000	Weak transcription	Esophagus	oesophagus

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