Variant report
Variant | rs941933 |
---|---|
Chromosome Location | chr1:152397413-152397414 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10888487 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11205007 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11579061 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1923492 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1923497 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1923500 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1951523 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2146114 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2146115 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2146118 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2203891 | 0.81[EUR][1000 genomes] |
rs4240876 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4240877 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4240878 | 0.85[EUR][1000 genomes] |
rs4240879 | 0.87[EUR][1000 genomes] |
rs4240880 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4240881 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4845432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4845434 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4845763 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs561260 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6587669 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6679896 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv1005472 | chr1:152247763-152443448 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
3 | nsv535161 | chr1:152247763-152443448 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv916016 | chr1:152337775-152590520 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:152392400-152399600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |