Variant report
| Variant | rs2203891 |
|---|---|
| Chromosome Location | chr1:152449991-152449992 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10888487 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11205007 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1923492 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1923497 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1923500 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1951523 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2146114 | 0.94[CEU][hapmap] |
| rs2146115 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2146118 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4240876 | 0.81[EUR][1000 genomes] |
| rs4240877 | 0.94[CEU][hapmap] |
| rs4240878 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4240879 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4240880 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4240881 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs476589 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4845432 | 0.81[EUR][1000 genomes] |
| rs4845434 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4845763 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs561260 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6587669 | 0.81[EUR][1000 genomes] |
| rs6679896 | 0.81[EUR][1000 genomes] |
| rs941933 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv916016 | chr1:152337775-152590520 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv872443 | chr1:152400055-152459747 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:152447400-152450200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr1:152449000-152453800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
