Variant report

Variant	rs11579802
Chromosome Location	chr1:170277251-170277252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10753803	0.87[ASN][1000 genomes]
rs10800510	0.86[ASN][1000 genomes]
rs10800511	0.86[ASN][1000 genomes]
rs11577543	0.87[ASN][1000 genomes]
rs11582930	0.85[ASN][1000 genomes]
rs11585499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802454	0.86[ASN][1000 genomes]
rs11802884	0.89[ASN][1000 genomes]
rs12404913	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12725915	0.85[ASN][1000 genomes]
rs12738543	0.83[ASN][1000 genomes]
rs12745998	0.81[ASN][1000 genomes]
rs2027010	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2095134	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2151244	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2151245	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2184042	0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs34335232	0.84[ASN][1000 genomes]
rs35038938	0.89[ASN][1000 genomes]
rs35102909	0.87[ASN][1000 genomes]
rs55834059	0.86[ASN][1000 genomes]
rs56185457	0.87[ASN][1000 genomes]
rs61827996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61827997	0.96[EUR][1000 genomes]
rs6700678	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs72703813	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7522187	0.82[ASN][1000 genomes]
rs7524746	0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7538465	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170270400-170279200	Weak transcription	Aorta	Aorta
2	chr1:170271800-170278600	Weak transcription	Right Atrium	heart
3	chr1:170273200-170278600	Weak transcription	Ovary	ovary
4	chr1:170275000-170277800	Enhancers	NHLF	lung
5	chr1:170275000-170278400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:170275200-170277400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:170275400-170278400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:170275400-170279000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:170275600-170277400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:170275600-170279000	Enhancers	NHDF-Ad	bronchial
11	chr1:170276000-170279200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:170276200-170278600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:170276200-170280400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:170276600-170278400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:170276800-170278400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:170276800-170278600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:170277000-170278000	Weak transcription	NH-A	brain
18	chr1:170277000-170278400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:170277200-170277600	Weak transcription	Fetal Heart	heart
20	chr1:170277200-170278200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:170277200-170278200	Weak transcription	Osteobl	bone
22	chr1:170277200-170278400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links