Variant report

Variant	rs61827997
Chromosome Location	chr1:170279419-170279420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170273398..170275086-chr1:170277805..170279619,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11579802	0.96[EUR][1000 genomes]
rs11585499	0.96[EUR][1000 genomes]
rs61827996	0.94[EUR][1000 genomes]
rs72703813	0.85[EUR][1000 genomes]
rs7538465	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170276200-170280400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:170278000-170279600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:170278200-170280400	Enhancers	Osteobl	bone
4	chr1:170278200-170280600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:170278400-170280000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:170278400-170280000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:170278400-170280200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:170278400-170280400	Enhancers	Fetal Muscle Leg	muscle
9	chr1:170278600-170279800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:170278600-170279800	Flanking Active TSS	NH-A	brain
11	chr1:170278600-170280000	Enhancers	HSMMtube	muscle
12	chr1:170279000-170279600	Enhancers	HSMM	muscle
13	chr1:170279000-170280000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:170279000-170280200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:170279000-170280600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:170279000-170280600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:170279200-170279800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:170279200-170284000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:170279400-170279800	Enhancers	Adipose Nuclei	Adipose
20	chr1:170279400-170279800	Enhancers	NHDF-Ad	bronchial
21	chr1:170279400-170280200	Enhancers	NHLF	lung
22	chr1:170279400-170284000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links