Variant report

Variant	rs11580135
Chromosome Location	chr1:179417780-179417781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:179417675-179418305	K562	blood:	n/a	n/a
2	CCNT2	chr1:179417639-179417843	K562	blood:	n/a	n/a
3	BHLHE40	chr1:179417644-179417794	K562	blood:	n/a	chr1:179417771-179417787
4	CTCF	chr1:179417603-179417829	K562	blood:	n/a	n/a
5	MYC	chr1:179417591-179418148	K562	blood:	n/a	n/a
6	RCOR1	chr1:179417737-179418238	K562	blood:	n/a	n/a
7	HMGN3	chr1:179417615-179417840	K562	blood:	n/a	n/a
8	RAD21	chr1:179417692-179417856	K562	blood:	n/a	n/a
9	MAX	chr1:179417523-179417854	K562	blood:	n/a	n/a
10	CTCF	chr1:179417700-179417850	K562	blood:	n/a	n/a
11	MAX	chr1:179417629-179417860	K562	blood:	n/a	n/a
12	UBTF	chr1:179417616-179417838	K562	blood:	n/a	n/a
13	ARID3A	chr1:179417315-179418149	K562	blood:	n/a	n/a
14	MAZ	chr1:179417759-179417834	K562	blood:	n/a	n/a
15	E2F6	chr1:179417649-179417864	K562	blood:	n/a	chr1:179417754-179417763
16	MAX	chr1:179417610-179417825	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOAT1-3	chr1:179417648-179417966	NONHSAT007860
2	lnc-SOAT1-3	chr1:179417648-179417967	NONHSAT007859

No data

Variant related genes	Relation type
MEF2AP1	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10798671	0.89[CEU][hapmap]
rs10913756	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10913765	0.81[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11802595	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12729906	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12743373	0.80[CEU][hapmap]
rs12749731	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12752024	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12754425	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12757065	0.80[CEU][hapmap]
rs4297245	0.94[CEU][hapmap]
rs4400577	0.81[CEU][hapmap]
rs4424468	0.81[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442334	0.89[CEU][hapmap]
rs4618931	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4625243	0.89[CEU][hapmap]
rs4651031	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651032	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651033	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652367	0.80[CEU][hapmap]
rs4652374	0.80[CEU][hapmap]
rs4652382	0.89[CEU][hapmap]
rs6425542	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6425543	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6425556	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425558	0.94[CEU][hapmap]
rs6664339	0.81[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6678667	0.80[CEU][hapmap]
rs6683623	0.94[CEU][hapmap]
rs6690348	0.81[CEU][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6693627	0.81[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7541905	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv946523	chr1:179417249-179426389	Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179417600-179418000	Active TSS	K562	blood

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