Variant report

Variant	rs11580808
Chromosome Location	chr1:186540221-186540222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186538076..186540937-chr1:186546480..186549087,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228238	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10798051	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911877	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10911878	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10911888	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911890	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911892	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10911895	0.85[EUR][1000 genomes]
rs11582183	0.87[EUR][1000 genomes]
rs11805124	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12087470	0.86[EUR][1000 genomes]
rs12093901	0.86[EUR][1000 genomes]
rs12402521	0.81[EUR][1000 genomes]
rs12728706	0.83[EUR][1000 genomes]
rs12750371	0.88[EUR][1000 genomes]
rs1799957	0.83[EUR][1000 genomes]
rs1929092	0.82[EUR][1000 genomes]
rs2024761	0.88[EUR][1000 genomes]
rs2180167	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2207727	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2383508	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34396375	0.88[EUR][1000 genomes]
rs35643079	0.83[EUR][1000 genomes]
rs36105782	0.83[EUR][1000 genomes]
rs3844242	0.86[EUR][1000 genomes]
rs3901950	0.86[EUR][1000 genomes]
rs4140433	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4567244	0.82[EUR][1000 genomes]
rs59547074	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6425035	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6659683	0.81[EUR][1000 genomes]
rs6666413	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666813	0.88[EUR][1000 genomes]
rs6672836	0.82[EUR][1000 genomes]
rs6675505	0.82[EUR][1000 genomes]
rs6677346	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6680252	0.84[EUR][1000 genomes]
rs6689065	0.87[EUR][1000 genomes]
rs6689727	0.84[EUR][1000 genomes]
rs6694957	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7518525	0.85[EUR][1000 genomes]
rs7536199	0.80[EUR][1000 genomes]
rs7556360	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv832059	chr1:186464932-186639125	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186535800-186544400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:186539600-186544000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:186539600-186544000	Weak transcription	Osteobl	bone
4	chr1:186540000-186544400	Weak transcription	Muscle Satellite Cultured Cells	--

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