Variant report

Variant	rs35643079
Chromosome Location	chr1:186436197-186436198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186431573..186434062-chr1:186434612..186436808,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10798051	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10911869	0.92[AFR][1000 genomes]
rs10911877	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10911878	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10911888	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10911890	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10911892	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10911895	0.81[EUR][1000 genomes]
rs11580808	0.83[EUR][1000 genomes]
rs11582183	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11800651	0.82[ASN][1000 genomes]
rs11805124	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11806017	0.82[ASN][1000 genomes]
rs12071770	0.83[AFR][1000 genomes]
rs12087470	0.82[EUR][1000 genomes]
rs12089415	0.91[AFR][1000 genomes]
rs12093901	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12402521	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406189	0.92[AFR][1000 genomes]
rs12406209	0.92[AFR][1000 genomes]
rs12409263	0.91[AFR][1000 genomes]
rs12410237	0.92[AFR][1000 genomes]
rs12728706	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750371	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16825403	0.82[ASN][1000 genomes]
rs16825434	0.81[ASN][1000 genomes]
rs16825469	0.83[AFR][1000 genomes]
rs1799957	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929092	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2024761	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2180167	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2207727	0.89[EUR][1000 genomes]
rs2383385	0.91[AFR][1000 genomes]
rs2383508	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33963275	0.82[ASN][1000 genomes]
rs34228564	0.82[ASN][1000 genomes]
rs34396375	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34869216	0.91[AFR][1000 genomes]
rs35868587	0.81[ASN][1000 genomes]
rs35945739	0.82[ASN][1000 genomes]
rs35999012	0.90[AFR][1000 genomes]
rs36105782	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3844242	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851884	0.91[AFR][1000 genomes]
rs3901950	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3933210	0.82[ASN][1000 genomes]
rs3934200	0.92[AFR][1000 genomes]
rs4140433	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4567244	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57390268	0.85[AFR][1000 genomes]
rs59547074	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425035	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6659683	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6666413	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6666813	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6672836	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675505	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6677346	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6679923	0.91[AFR][1000 genomes]
rs6680252	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6689065	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6689727	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6692629	0.92[AFR][1000 genomes]
rs6694957	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71634164	0.82[ASN][1000 genomes]
rs72719487	0.91[AFR][1000 genomes]
rs72719501	0.83[AFR][1000 genomes]
rs7518525	0.81[EUR][1000 genomes]
rs7523747	0.83[AFR][1000 genomes]
rs7525586	0.88[AFR][1000 genomes]
rs7526069	0.83[AFR][1000 genomes]
rs7534971	0.81[AFR][1000 genomes]
rs7536199	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7555973	0.92[AFR][1000 genomes]
rs7556360	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1822818	chr1:186301447-186441585	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv1824284	chr1:186358588-186441585	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186406600-186450000	Weak transcription	Brain Angular Gyrus	brain

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