Variant report

Variant	rs16825434
Chromosome Location	chr1:186451165-186451166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10489396	1.00[CEU][hapmap]
rs10489397	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs1108635	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11799322	0.85[AMR][1000 genomes]
rs11800288	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11800338	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11800651	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11801527	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11801617	0.84[EUR][1000 genomes]
rs11802705	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11803944	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11803969	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11804161	0.84[AMR][1000 genomes]
rs11804785	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11805597	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11806017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11806329	0.85[AMR][1000 genomes]
rs11806663	0.85[AMR][1000 genomes]
rs11806701	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11807318	0.84[AMR][1000 genomes]
rs11807443	0.85[AMR][1000 genomes]
rs11807927	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11808643	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11808900	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs11810534	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs11811259	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11811260	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11812050	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12093901	0.80[ASN][1000 genomes]
rs12723621	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12726528	0.90[AMR][1000 genomes]
rs12726764	0.90[AMR][1000 genomes]
rs12728706	0.81[ASN][1000 genomes]
rs12731288	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12731687	0.81[AMR][1000 genomes]
rs12739006	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12739643	0.81[AMR][1000 genomes]
rs12747113	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12747991	0.90[AMR][1000 genomes]
rs12750686	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12752376	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12753223	0.85[AMR][1000 genomes]
rs12754662	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16825361	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16825403	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16825473	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16825519	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16825600	0.81[AMR][1000 genomes]
rs1799957	0.81[ASN][1000 genomes]
rs1883650	0.82[AMR][1000 genomes]
rs2008704	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2206974	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2223783	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2223784	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2383509	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2891249	0.82[AMR][1000 genomes]
rs33963275	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33996079	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34200789	0.85[AMR][1000 genomes]
rs34228564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34249733	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34272627	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34310508	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34459464	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34513409	0.84[EUR][1000 genomes]
rs34578387	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34778311	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34781399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34858233	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35205448	0.82[AMR][1000 genomes]
rs35206897	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35240980	0.85[AMR][1000 genomes]
rs35326401	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35461575	0.82[AMR][1000 genomes]
rs35481005	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35636342	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35643079	0.81[ASN][1000 genomes]
rs35868587	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35945739	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36016361	0.85[AMR][1000 genomes]
rs36030781	0.85[AMR][1000 genomes]
rs36053737	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36105782	0.81[ASN][1000 genomes]
rs3844242	0.82[ASN][1000 genomes]
rs3901243	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3901950	0.80[ASN][1000 genomes]
rs3933210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140432	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4140434	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58626385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6674145	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6678198	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6680055	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6682896	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6683271	0.81[AMR][1000 genomes]
rs6689727	0.82[ASN][1000 genomes]
rs71634161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71634164	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71634167	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71634173	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71634175	0.81[AMR][1000 genomes]
rs71634176	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186447400-186451800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:186449800-186451200	Enhancers	Hela-S3	cervix
3	chr1:186450000-186451600	Weak transcription	HUVEC	blood vessel
4	chr1:186450800-186451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:186451000-186455800	Weak transcription	Osteobl	bone

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