Variant report

Variant	rs11581175
Chromosome Location	chr1:154908258-154908259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10796935	0.81[AFR][1000 genomes]
rs11264286	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11264287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11799384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16836521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891805	1.00[CEU][hapmap]
rs2211498	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34215800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4339857	0.81[AFR][1000 genomes]
rs55887894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56720968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689022	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6696628	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7539805	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7543051	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7551495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv872453	chr1:154904840-154995503	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154884800-154908400	Weak transcription	Psoas Muscle	Psoas
2	chr1:154891200-154908600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:154894400-154908400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:154896800-154908600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:154898200-154908400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:154899200-154908600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:154899200-154908800	Weak transcription	Small Intestine	intestine
8	chr1:154899400-154908400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:154899400-154908400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:154900600-154908400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:154901000-154908400	Weak transcription	NHDF-Ad	bronchial
12	chr1:154901600-154908600	Weak transcription	Right Ventricle	heart
13	chr1:154901800-154908400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:154902000-154908400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:154902400-154908400	Weak transcription	Aorta	Aorta
16	chr1:154902400-154908400	Weak transcription	Fetal Lung	lung
17	chr1:154902400-154908800	Weak transcription	Gastric	stomach
18	chr1:154902600-154908600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:154904800-154908600	Weak transcription	Esophagus	oesophagus
20	chr1:154905000-154908400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:154907400-154908400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:154907600-154908400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr1:154907600-154908400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:154907600-154908400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:154907600-154908400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:154907600-154908400	Enhancers	Placenta	Placenta
27	chr1:154907600-154908400	Enhancers	Fetal Stomach	stomach
28	chr1:154907600-154908600	Enhancers	Fetal Thymus	thymus
29	chr1:154907600-154908600	Enhancers	Lung	lung
30	chr1:154907600-154908800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr1:154907600-154908800	Enhancers	Spleen	Spleen
32	chr1:154907800-154908400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr1:154907800-154908400	Enhancers	Primary B cells from cord blood	blood
34	chr1:154907800-154908400	Enhancers	Primary B cells from peripheral blood	blood
35	chr1:154907800-154908400	Enhancers	Primary T cells from cord blood	blood
36	chr1:154907800-154908400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr1:154907800-154908400	Enhancers	Liver	Liver
38	chr1:154907800-154908400	Genic enhancers	Fetal Intestine Small	intestine
39	chr1:154907800-154908600	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr1:154907800-154908600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr1:154907800-154908600	Enhancers	HepG2	liver
42	chr1:154907800-154909200	Flanking Active TSS	Dnd41	blood
43	chr1:154908000-154908400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr1:154908000-154908400	Enhancers	Hela-S3	cervix
45	chr1:154908000-154908600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:154908000-154908600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:154908000-154909000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:154908000-154909200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr1:154908200-154908400	Enhancers	H9 Cell Line	embryonic stem cell
50	chr1:154908200-154908400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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