Variant report

Variant	rs11264286
Chromosome Location	chr1:154903047-154903048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154902125..154904691-chr1:154910364..154912646,2	K562	blood:
2	chr1:154900011..154901853-chr1:154902099..154904633,2	K562	blood:
3	chr1:154901654..154906164-chr1:154907018..154910146,5	K562	blood:
4	chr1:154897179..154899202-chr1:154902262..154904996,2	K562	blood:
5	chr1:154901094..154903589-chr1:154973486..154975306,2	K562	blood:

Variant related genes	Relation type
ENSG00000160685	Chromatin interaction
ENSG00000163344	Chromatin interaction
ENSG00000270361	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10908448	0.88[LWK][hapmap];0.96[YRI][hapmap]
rs11264287	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11581175	1.00[CEU][hapmap]
rs11799384	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1218582	0.92[YRI][hapmap]
rs1580943	0.95[YRI][hapmap]
rs16836521	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1891805	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2102423	0.96[YRI][hapmap]
rs2174507	0.96[YRI][hapmap]
rs2211498	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2335408	0.96[YRI][hapmap]
rs34215800	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4845398	0.89[YRI][hapmap]
rs4845690	0.88[LWK][hapmap];0.96[YRI][hapmap]
rs55887894	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56720968	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6689022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6696628	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6699043	0.96[YRI][hapmap]
rs7539805	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7543051	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551495	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs869506	0.96[YRI][hapmap]
rs877343	0.83[LWK][hapmap];0.92[YRI][hapmap]
rs906593	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv432942	chr1:154818353-154903047	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv464073	chr1:154837796-154904840	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv547960	chr1:154837796-154904840	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv2977	chr1:154881053-154907613	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154884800-154908400	Weak transcription	Psoas Muscle	Psoas
2	chr1:154886800-154908200	Weak transcription	Fetal Heart	heart
3	chr1:154891200-154908600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:154892600-154903600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:154892600-154905400	Strong transcription	Fetal Muscle Leg	muscle
6	chr1:154893200-154905600	Strong transcription	Stomach Smooth Muscle	stomach
7	chr1:154893200-154908200	Weak transcription	NH-A	brain
8	chr1:154893400-154905600	Strong transcription	Fetal Stomach	stomach
9	chr1:154893800-154903800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:154893800-154904000	Weak transcription	Stomach Mucosa	stomach
11	chr1:154894200-154905000	Strong transcription	Fetal Brain Female	brain
12	chr1:154894400-154904800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:154894400-154908400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:154894600-154903600	Strong transcription	Fetal Intestine Small	intestine
15	chr1:154894600-154905000	Strong transcription	Fetal Muscle Trunk	muscle
16	chr1:154894800-154903400	Strong transcription	Fetal Intestine Large	intestine
17	chr1:154894800-154904800	Strong transcription	Esophagus	oesophagus
18	chr1:154894800-154904800	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:154894800-154905000	Strong transcription	Adipose Nuclei	Adipose
20	chr1:154894800-154905000	Strong transcription	Brain Germinal Matrix	brain
21	chr1:154894800-154905000	Strong transcription	GM12878-XiMat	blood
22	chr1:154895000-154905000	Strong transcription	Brain Hippocampus Middle	brain
23	chr1:154895000-154907600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:154895800-154904600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:154895800-154904600	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:154895800-154908000	Weak transcription	Fetal Brain Male	brain
27	chr1:154896000-154908200	Weak transcription	HUVEC	blood vessel
28	chr1:154896800-154908600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:154898000-154903800	Weak transcription	Hela-S3	cervix
30	chr1:154898200-154908400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:154898800-154904200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:154898800-154905000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:154898800-154908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:154898800-154908200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:154898800-154908200	Weak transcription	HSMMtube	muscle
36	chr1:154899000-154905000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr1:154899000-154905200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr1:154899000-154907600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:154899000-154908200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:154899000-154908200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr1:154899200-154904200	Weak transcription	A549	lung
42	chr1:154899200-154904200	Weak transcription	NHEK	skin
43	chr1:154899200-154904800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr1:154899200-154907600	Weak transcription	Dnd41	blood
45	chr1:154899200-154908200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:154899200-154908200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:154899200-154908200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr1:154899200-154908600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr1:154899200-154908800	Weak transcription	Small Intestine	intestine
50	chr1:154899400-154903400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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