The 2.0 version of rSNPBase

Variant report

Variant rs4845690
Chromosome Location chr1:154886817-154886818
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154879200-154893200 Weak transcription Stomach Smooth Muscle stomach
2 chr1:154879800-154894800 Weak transcription Aorta Aorta
3 chr1:154880400-154894400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:154881400-154894800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr1:154881600-154895800 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:154882200-154891200 Weak transcription Fetal Stomach stomach
7 chr1:154882400-154897800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr1:154882600-154889200 Weak transcription Fetal Intestine Small intestine
9 chr1:154882800-154897400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:154883200-154887200 Enhancers Breast Myoepithelial Primary Cells Breast
11 chr1:154883400-154894800 Weak transcription Primary T cells from cord blood blood
12 chr1:154883600-154893200 Weak transcription Liver Liver
13 chr1:154883600-154895000 Weak transcription Placenta Placenta
14 chr1:154883800-154894800 Weak transcription Brain Germinal Matrix brain
15 chr1:154884000-154893400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:154884000-154894600 Weak transcription Gastric stomach
17 chr1:154884000-154895200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:154884000-154897800 Weak transcription HMEC breast
19 chr1:154884200-154887200 Enhancers Left Ventricle heart
20 chr1:154884600-154887000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:154884600-154887000 Weak transcription NHEK skin
22 chr1:154884600-154887200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:154884600-154894800 Weak transcription Adipose Nuclei Adipose
24 chr1:154884800-154887000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:154884800-154894800 Weak transcription Brain Substantia Nigra brain
26 chr1:154884800-154894800 Weak transcription Spleen Spleen
27 chr1:154884800-154896200 Weak transcription Colon Smooth Muscle Colon
28 chr1:154884800-154908400 Weak transcription Psoas Muscle Psoas
29 chr1:154885000-154889200 Weak transcription GM12878-XiMat blood
30 chr1:154885000-154892600 Weak transcription Fetal Muscle Leg muscle
31 chr1:154885000-154894800 Weak transcription Esophagus oesophagus
32 chr1:154885000-154895000 Weak transcription Brain Anterior Caudate brain
33 chr1:154885000-154895000 Weak transcription Ovary ovary
34 chr1:154885200-154892600 Weak transcription Primary B cells from peripheral blood blood
35 chr1:154885200-154895000 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:154885400-154894800 Weak transcription Lung lung
37 chr1:154885600-154894200 Weak transcription Duodenum Mucosa Duodenum
38 chr1:154885800-154893400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr1:154885800-154894200 Weak transcription Fetal Brain Female brain
40 chr1:154886000-154897200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:154886400-154889400 Weak transcription HepG2 liver
42 chr1:154886600-154894800 Weak transcription Right Ventricle heart
43 chr1:154886800-154894800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:154886800-154895400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:154886800-154908200 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015