Variant report

Variant	rs11264280
Chromosome Location	chr1:154862952-154862953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154856910..154859429-chr1:154860330..154863097,2	MCF-7	breast:
2	chr1:154862185..154864763-chr1:154865065..154866622,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1007170	0.84[ASN][1000 genomes]
rs10796934	0.83[ASN][1000 genomes]
rs10796935	0.84[ASN][1000 genomes]
rs10908445	0.83[ASN][1000 genomes]
rs10908446	0.89[ASN][1000 genomes]
rs10908447	0.89[ASN][1000 genomes]
rs10908448	0.84[ASN][1000 genomes]
rs1109815	0.81[ASN][1000 genomes]
rs11264278	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11264281	0.89[ASN][1000 genomes]
rs11264282	0.89[ASN][1000 genomes]
rs11264283	0.89[ASN][1000 genomes]
rs11264284	0.88[ASN][1000 genomes]
rs11264290	0.81[ASN][1000 genomes]
rs12036859	0.89[ASN][1000 genomes]
rs12069356	0.83[ASN][1000 genomes]
rs12095061	0.81[ASN][1000 genomes]
rs12130132	0.84[ASN][1000 genomes]
rs1580943	0.89[ASN][1000 genomes]
rs1976559	0.84[ASN][1000 genomes]
rs1977879	0.84[ASN][1000 genomes]
rs2102423	0.81[ASN][1000 genomes]
rs2135219	0.89[ASN][1000 genomes]
rs2174507	0.84[ASN][1000 genomes]
rs2335407	0.81[ASN][1000 genomes]
rs2335408	0.81[ASN][1000 genomes]
rs2335409	0.81[ASN][1000 genomes]
rs4240874	0.84[ASN][1000 genomes]
rs4240875	0.84[ASN][1000 genomes]
rs4339857	0.84[ASN][1000 genomes]
rs4578216	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845398	0.89[ASN][1000 genomes]
rs4845400	0.89[ASN][1000 genomes]
rs4845678	0.89[ASN][1000 genomes]
rs4845679	0.89[ASN][1000 genomes]
rs4845680	0.89[ASN][1000 genomes]
rs4845681	0.85[ASN][1000 genomes]
rs4845682	0.88[ASN][1000 genomes]
rs4845683	0.88[ASN][1000 genomes]
rs4845685	0.80[ASN][1000 genomes]
rs4845687	0.82[ASN][1000 genomes]
rs4845688	0.84[ASN][1000 genomes]
rs4845689	0.84[ASN][1000 genomes]
rs4845690	0.84[ASN][1000 genomes]
rs4845691	0.84[ASN][1000 genomes]
rs4845693	0.81[ASN][1000 genomes]
rs4845694	0.81[ASN][1000 genomes]
rs4845696	0.81[ASN][1000 genomes]
rs6656435	0.88[ASN][1000 genomes]
rs6669791	0.81[ASN][1000 genomes]
rs6674853	0.84[ASN][1000 genomes]
rs6683557	0.84[ASN][1000 genomes]
rs6686873	0.81[ASN][1000 genomes]
rs6699043	0.81[ASN][1000 genomes]
rs72702224	0.81[ASN][1000 genomes]
rs7528532	0.89[ASN][1000 genomes]
rs7544528	0.81[ASN][1000 genomes]
rs869506	0.89[ASN][1000 genomes]
rs877343	0.81[ASN][1000 genomes]
rs906593	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv29982	chr1:154818353-154882544	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv432942	chr1:154818353-154903047	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464073	chr1:154837796-154904840	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547960	chr1:154837796-154904840	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154858000-154863800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:154859400-154863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:154859400-154863600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:154859600-154863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:154859600-154863800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:154861800-154863400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:154862200-154868200	Weak transcription	K562	blood

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