Variant report

Variant	rs11264278
Chromosome Location	chr1:154845534-154845535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr1:154845494-154845694	K562	blood:	n/a	n/a
2	CTCF	chr1:154845491-154845572	Lung_OC	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154843876..154848485-chr1:154848730..154854790,7	K562	blood:
2	chr1:154835876..154837706-chr1:154845124..154847917,3	MCF-7	breast:
3	chr1:154844710..154847396-chr1:154974560..154977442,2	K562	blood:
4	chr1:154845435..154848130-chr1:154852897..154855839,2	MCF-7	breast:
5	chr1:154844363..154847365-chr1:154847993..154851967,4	K562	blood:

No data

Variant related genes	Relation type
KCNN3	TF binding region
ENSG00000160685	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10796934	0.89[ASN][1000 genomes]
rs10908444	0.84[ASN][1000 genomes]
rs10908445	0.89[ASN][1000 genomes]
rs10908446	0.83[ASN][1000 genomes]
rs10908447	0.83[ASN][1000 genomes]
rs11264280	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11264281	0.83[ASN][1000 genomes]
rs11264282	0.83[ASN][1000 genomes]
rs11264283	0.83[ASN][1000 genomes]
rs11264284	0.81[ASN][1000 genomes]
rs12036859	0.83[ASN][1000 genomes]
rs12069356	0.89[ASN][1000 genomes]
rs1580943	0.83[ASN][1000 genomes]
rs2135219	0.83[ASN][1000 genomes]
rs2335407	0.88[ASN][1000 genomes]
rs4578216	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4845398	0.83[ASN][1000 genomes]
rs4845400	0.83[ASN][1000 genomes]
rs4845677	0.84[ASN][1000 genomes]
rs4845678	0.83[ASN][1000 genomes]
rs4845679	0.83[ASN][1000 genomes]
rs4845680	0.83[ASN][1000 genomes]
rs4845682	0.81[ASN][1000 genomes]
rs4845683	0.81[ASN][1000 genomes]
rs6656435	0.81[ASN][1000 genomes]
rs6656494	0.84[ASN][1000 genomes]
rs6669791	0.88[ASN][1000 genomes]
rs6683557	0.88[ASN][1000 genomes]
rs7528532	0.83[ASN][1000 genomes]
rs7544528	0.88[ASN][1000 genomes]
rs7553195	0.84[ASN][1000 genomes]
rs869506	0.83[ASN][1000 genomes]
rs883718	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv432931	chr1:154794318-154855055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv29982	chr1:154818353-154882544	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv432942	chr1:154818353-154903047	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv432964	chr1:154820067-154849590	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv432953	chr1:154820067-154855055	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv464073	chr1:154837796-154904840	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv547960	chr1:154837796-154904840	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154843200-154849800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:154843200-154850800	Weak transcription	Ovary	ovary
3	chr1:154843200-154854200	Weak transcription	Fetal Kidney	kidney
4	chr1:154843200-154854200	Weak transcription	Right Atrium	heart
5	chr1:154843400-154849800	Weak transcription	Brain Substantia Nigra	brain
6	chr1:154843800-154849400	Weak transcription	A549	lung
7	chr1:154844000-154849600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:154844000-154850200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:154844400-154846400	Weak transcription	GM12878-XiMat	blood
10	chr1:154844400-154850800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:154845200-154845600	Enhancers	Pancreas	Pancrea
12	chr1:154845400-154846000	Enhancers	K562	blood

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