Variant report

Variant	rs115814455
Chromosome Location	chr6:36935311-36935312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36853681..36855481-chr6:36934818..36937310,2	K562	blood:
3	chr6:36934586..36938326-chr6:36939684..36941889,3	MCF-7	breast:
4	chr6:36934908..36939247-chr6:36952489..36955593,6	MCF-7	breast:
5	chr6:36927877..36929590-chr6:36935143..36936751,2	MCF-7	breast:
6	chr6:36903375..36906327-chr6:36934903..36936989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv525288	chr6:36934244-36937647	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
2	chr6:36929000-36935400	Weak transcription	Ovary	ovary
3	chr6:36929000-36935400	Weak transcription	A549	lung
4	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
5	chr6:36931400-36935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:36931600-36935400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:36931600-36935400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:36931600-36936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36931600-36938600	Weak transcription	Fetal Brain Male	brain
10	chr6:36931800-36935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:36931800-36948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:36932200-36935400	Weak transcription	GM12878-XiMat	blood
13	chr6:36932400-36946800	Strong transcription	Fetal Brain Female	brain
14	chr6:36932400-36951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:36932600-36936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:36932800-36947400	Strong transcription	Fetal Stomach	stomach
17	chr6:36933000-36935400	Weak transcription	Fetal Kidney	kidney
18	chr6:36933000-36935600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:36933000-36936400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:36933200-36935400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:36933200-36936000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:36933200-36936000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:36933200-36936200	Strong transcription	Fetal Muscle Leg	muscle
24	chr6:36933200-36936200	Weak transcription	Right Atrium	heart
25	chr6:36933200-36937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:36933800-36938200	Strong transcription	Fetal Thymus	thymus
27	chr6:36933800-36940400	Strong transcription	Adipose Nuclei	Adipose
28	chr6:36933800-36946800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:36933800-36946800	Strong transcription	Brain Anterior Caudate	brain
30	chr6:36933800-36947200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:36934000-36936000	Weak transcription	Psoas Muscle	Psoas
32	chr6:36934000-36937200	Strong transcription	HSMM	muscle
33	chr6:36934000-36940600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:36934000-36941000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:36934000-36946600	Strong transcription	Thymus	Thymus
36	chr6:36934000-36946800	Strong transcription	Primary T cells from cord blood	blood
37	chr6:36934000-36946800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:36934000-36946800	Strong transcription	Colon Smooth Muscle	Colon
39	chr6:36934000-36949600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:36934000-36951600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36934200-36935800	Genic enhancers	Fetal Intestine Small	intestine
42	chr6:36934200-36936000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:36934200-36936200	Strong transcription	Lung	lung
44	chr6:36934200-36940800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr6:36934200-36941000	Strong transcription	Brain Hippocampus Middle	brain
46	chr6:36934200-36946600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:36934200-36946600	Strong transcription	NHDF-Ad	bronchial
48	chr6:36934200-36946800	Strong transcription	Brain Germinal Matrix	brain
49	chr6:36934200-36947000	Strong transcription	Osteobl	bone
50	chr6:36934200-36947200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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