Variant report

Variant	rs11582525
Chromosome Location	chr1:151793571-151793572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151786877..151789980-chr1:151790963..151794065,3	K562	blood:
2	chr1:151763352..151764892-chr1:151792171..151794481,2	MCF-7	breast:
3	chr1:151785706..151787587-chr1:151791618..151793620,2	MCF-7	breast:
4	chr1:151734599..151737302-chr1:151792867..151794521,3	MCF-7	breast:
5	chr1:151788480..151790038-chr1:151792565..151794088,2	K562	blood:
6	chr1:151789315..151792282-chr1:151793123..151796667,3	MCF-7	breast:
7	chr1:151729177..151730822-chr1:151791781..151793966,2	MCF-7	breast:
8	chr1:151732397..151736165-chr1:151791391..151794287,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143365	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000236940	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000143450	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11204894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12126984	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs2280471	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3790515	0.91[JPT][hapmap]
rs3811417	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs3811418	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs3811419	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs4845602	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4845606	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72692781	0.91[EUR][1000 genomes]
rs72692783	0.91[EUR][1000 genomes]
rs7540799	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv160848	chr1:151789609-151796769	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151778600-151802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151784800-151794600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:151784800-151794800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:151786600-151793600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:151786800-151793600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:151786800-151795000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:151787400-151800000	Weak transcription	Spleen	Spleen
8	chr1:151788200-151796800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
9	chr1:151789400-151794400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:151789400-151794600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:151789600-151793600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:151790000-151799000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:151790200-151801600	Weak transcription	Right Atrium	heart
14	chr1:151790600-151793800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:151790600-151794200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:151791000-151800600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:151791600-151795600	Enhancers	Liver	Liver
18	chr1:151792000-151793600	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr1:151792000-151793800	Enhancers	Psoas Muscle	Psoas
20	chr1:151792000-151794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:151792000-151795000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:151792000-151796000	Flanking Active TSS	Dnd41	blood
23	chr1:151792200-151794400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr1:151792200-151795000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr1:151792200-151795400	Enhancers	Primary hematopoietic stem cells	blood
26	chr1:151792400-151793600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:151792400-151793800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:151792400-151793800	Enhancers	Adipose Nuclei	Adipose
29	chr1:151792400-151793800	Enhancers	Right Ventricle	heart
30	chr1:151792400-151793800	Flanking Active TSS	Hela-S3	cervix
31	chr1:151792400-151794000	Enhancers	HMEC	breast
32	chr1:151792400-151794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:151792400-151794400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr1:151792400-151795200	Enhancers	Primary T cells from cord blood	blood
35	chr1:151792400-151795200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr1:151792400-151795200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr1:151792600-151793600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:151792600-151793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:151792800-151793600	Enhancers	Fetal Muscle Leg	muscle
40	chr1:151792800-151794000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr1:151792800-151794000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:151792800-151795000	Enhancers	Pancreas	Pancrea
43	chr1:151793000-151794000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr1:151793000-151795400	Enhancers	GM12878-XiMat	blood
45	chr1:151793000-151800600	Weak transcription	Lung	lung
46	chr1:151793200-151793600	Enhancers	Brain Germinal Matrix	brain
47	chr1:151793200-151795000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:151793400-151793600	Enhancers	Stomach Mucosa	stomach
49	chr1:151793400-151793600	Flanking Active TSS	Thymus	Thymus
50	chr1:151793400-151800200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links