Variant report

Variant	rs4845602
Chromosome Location	chr1:151799790-151799791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151767476..151771496-chr1:151798617..151803699,6	MCF-7	breast:
2	chr1:151760700..151764856-chr1:151797170..151799946,4	MCF-7	breast:
3	chr1:151797506..151800180-chr1:152018704..152020909,2	MCF-7	breast:
4	chr1:151760713..151763844-chr1:151798601..151801900,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182134	Chromatin interaction
ENSG00000269489	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000163191	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11582525	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126984	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3790515	0.82[JPT][hapmap]
rs3811417	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3811418	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3811419	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4845606	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72692781	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72692783	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7540799	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151778600-151802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151787400-151800000	Weak transcription	Spleen	Spleen
3	chr1:151790200-151801600	Weak transcription	Right Atrium	heart
4	chr1:151791000-151800600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:151793000-151800600	Weak transcription	Lung	lung
6	chr1:151793400-151800200	Weak transcription	Gastric	stomach
7	chr1:151793600-151800800	Weak transcription	Stomach Mucosa	stomach
8	chr1:151793600-151801000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:151795200-151799800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:151795400-151800400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:151795400-151800600	Weak transcription	GM12878-XiMat	blood
12	chr1:151795600-151801800	Genic enhancers	Liver	Liver
13	chr1:151796000-151800600	Weak transcription	Colonic Mucosa	Colon
14	chr1:151796000-151801000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:151796200-151801000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:151796200-151803600	Enhancers	Fetal Muscle Trunk	muscle
17	chr1:151796400-151800600	Enhancers	Primary T cells from cord blood	blood
18	chr1:151796800-151800600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:151797000-151803600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:151797800-151800800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:151797800-151803800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr1:151798400-151800600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:151798400-151800800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:151798400-151800800	Weak transcription	Brain Substantia Nigra	brain
25	chr1:151798400-151801600	Weak transcription	Right Ventricle	heart
26	chr1:151798400-151807000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr1:151798600-151800600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:151798600-151800800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:151798600-151800800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:151798600-151800800	Weak transcription	Fetal Lung	lung
31	chr1:151798600-151801000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:151798800-151799800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:151798800-151800600	Weak transcription	Adipose Nuclei	Adipose
34	chr1:151798800-151801800	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:151798800-151804400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:151799000-151799800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr1:151799000-151800200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:151799000-151800400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:151799000-151800400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:151799000-151800600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:151799000-151800600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr1:151799000-151800600	Weak transcription	Fetal Intestine Large	intestine
43	chr1:151799000-151800800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:151799000-151801000	Weak transcription	Brain Anterior Caudate	brain
45	chr1:151799000-151801000	Weak transcription	Esophagus	oesophagus
46	chr1:151799000-151801000	Weak transcription	Psoas Muscle	Psoas
47	chr1:151799000-151801400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr1:151799000-151807800	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr1:151799200-151799800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:151799200-151800000	Enhancers	Skeletal Muscle Female	skeletal muscle

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