Variant report

Variant	rs11583201
Chromosome Location	chr1:59186777-59186778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr1:59186198-59186818	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59181312..59183147-chr1:59184549..59186820,2	K562	blood:

Variant related genes	Relation type
ENSG00000222168	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10889115	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12118682	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12143680	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12405774	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12409869	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12747063	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs232795	0.85[JPT][hapmap]
rs34882065	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7524931	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7528508	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7548025	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11583201	MYSM1	Cis_1M	lymphoblastoid	RTeQTL
rs11583201	INADL	cis	parietal	SCAN
rs11583201	PARS2	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:59180600-59192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:59183000-59189400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:59183400-59197600	Weak transcription	Aorta	Aorta
5	chr1:59183600-59193000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:59184000-59187000	Weak transcription	Right Atrium	heart
7	chr1:59184000-59192600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:59184200-59188600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:59184400-59187000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:59184600-59187000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:59184600-59192200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:59184600-59193000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:59184800-59188200	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:59184800-59188200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:59185000-59188800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:59185200-59187200	Weak transcription	Adipose Nuclei	Adipose
17	chr1:59185200-59192400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:59185400-59188400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:59185400-59188400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:59185400-59190200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:59185800-59186800	Weak transcription	HUVEC	blood vessel
22	chr1:59185800-59189000	Enhancers	HMEC	breast
23	chr1:59185800-59189200	Weak transcription	Dnd41	blood
24	chr1:59185800-59193200	Weak transcription	Left Ventricle	heart
25	chr1:59185800-59193200	Weak transcription	Spleen	Spleen
26	chr1:59186000-59187200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:59186000-59189000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:59186000-59190200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:59186200-59187600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:59186200-59187800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:59186200-59189000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr1:59186200-59189000	Enhancers	Osteobl	bone
33	chr1:59186400-59186800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:59186400-59187400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:59186400-59187600	Enhancers	NHDF-Ad	bronchial
36	chr1:59186400-59187600	Enhancers	NHEK	skin
37	chr1:59186600-59186800	Enhancers	NH-A	brain
38	chr1:59186600-59187200	Enhancers	Esophagus	oesophagus
39	chr1:59186600-59187800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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