Variant report

Variant	rs7548025
Chromosome Location	chr1:59182039-59182040
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10889115	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11207290	0.84[AMR][1000 genomes]
rs11207291	0.80[AMR][1000 genomes]
rs11576713	0.80[AMR][1000 genomes]
rs11583201	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12118682	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12123717	0.80[AMR][1000 genomes]
rs12143680	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12405774	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12409869	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12747063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34882065	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4912202	0.80[AMR][1000 genomes]
rs7524931	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7528508	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7548025	MYSM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176000-59182800	Weak transcription	HUVEC	blood vessel
3	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:59180600-59192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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