Variant report

Variant	rs1158383
Chromosome Location	chr12:106388841-106388842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11112835	0.90[JPT][hapmap]
rs12578910	0.89[ASN][1000 genomes]
rs17038002	1.00[JPT][hapmap]
rs7956646	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106382200-106392200	Weak transcription	Fetal Brain Male	brain
2	chr12:106386800-106389800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:106387200-106391600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:106387400-106390000	Enhancers	Brain Hippocampus Middle	brain
5	chr12:106387400-106391600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:106387600-106389400	Weak transcription	HSMM	muscle
7	chr12:106387600-106389600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:106387800-106389200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:106387800-106389200	Enhancers	Brain Cingulate Gyrus	brain
10	chr12:106387800-106389600	Weak transcription	Gastric	stomach
11	chr12:106388000-106389000	Enhancers	Brain Substantia Nigra	brain
12	chr12:106388000-106389400	Enhancers	Brain Angular Gyrus	brain
13	chr12:106388200-106389600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:106388200-106389600	Weak transcription	Psoas Muscle	Psoas
15	chr12:106388200-106389800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr12:106388200-106390200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:106388400-106389000	Enhancers	Fetal Stomach	stomach
18	chr12:106388600-106389000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
19	chr12:106388600-106390400	Enhancers	HSMMtube	muscle
20	chr12:106388800-106393200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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