Variant report

Variant	rs12578910
Chromosome Location	chr12:106388549-106388550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1158383	0.89[ASN][1000 genomes]
rs12582471	0.91[AFR][1000 genomes]
rs35272873	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106382200-106392200	Weak transcription	Fetal Brain Male	brain
2	chr12:106386200-106388600	Genic enhancers	HSMMtube	muscle
3	chr12:106386800-106389800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:106387000-106388800	Enhancers	NH-A	brain
5	chr12:106387200-106391600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:106387400-106390000	Enhancers	Brain Hippocampus Middle	brain
7	chr12:106387400-106391600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:106387600-106389400	Weak transcription	HSMM	muscle
9	chr12:106387600-106389600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:106387800-106389200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:106387800-106389200	Enhancers	Brain Cingulate Gyrus	brain
12	chr12:106387800-106389600	Weak transcription	Gastric	stomach
13	chr12:106388000-106388800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr12:106388000-106388800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:106388000-106389000	Enhancers	Brain Substantia Nigra	brain
16	chr12:106388000-106389400	Enhancers	Brain Angular Gyrus	brain
17	chr12:106388200-106389600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:106388200-106389600	Weak transcription	Psoas Muscle	Psoas
19	chr12:106388200-106389800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:106388200-106390200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:106388400-106389000	Enhancers	Fetal Stomach	stomach

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