Variant report

Variant	rs35272873
Chromosome Location	chr12:106375531-106375532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12578910	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106370200-106376600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:106370800-106376800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:106372000-106375800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:106372000-106380800	Weak transcription	Osteobl	bone
6	chr12:106372000-106381600	Weak transcription	NHLF	lung
7	chr12:106372400-106377200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:106372600-106377000	Weak transcription	NH-A	brain
9	chr12:106373000-106376000	Weak transcription	HMEC	breast
10	chr12:106373000-106376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:106373000-106376800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr12:106373200-106375600	Weak transcription	HSMM	muscle
13	chr12:106373200-106381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:106373600-106376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:106374600-106375600	Weak transcription	Fetal Lung	lung
16	chr12:106374600-106376000	Weak transcription	Psoas Muscle	Psoas
17	chr12:106374600-106377600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:106374800-106376000	Weak transcription	Right Ventricle	heart
19	chr12:106374800-106376200	Weak transcription	Left Ventricle	heart
20	chr12:106375000-106376000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr12:106375000-106376800	Enhancers	Adipose Nuclei	Adipose
22	chr12:106375000-106377600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:106375200-106375600	Weak transcription	HSMMtube	muscle
24	chr12:106375200-106376400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr12:106375200-106376400	Weak transcription	Spleen	Spleen
26	chr12:106375200-106377600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr12:106375400-106375800	Flanking Active TSS	Fetal Heart	heart
28	chr12:106375400-106377000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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