Variant report

Variant	rs11585297
Chromosome Location	chr1:224927968-224927969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224903173..224906981-chr1:224925522..224929021,3	K562	blood:
2	chr1:224925558..224928384-chr1:224934296..224936799,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2018908	1.00[ASW][hapmap]
rs920133	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224921600-224931400	Weak transcription	Psoas Muscle	Psoas
2	chr1:224921800-224934600	Weak transcription	HMEC	breast
3	chr1:224923600-224928200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:224924000-224932600	Enhancers	Fetal Brain Male	brain
5	chr1:224924400-224929600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:224924800-224931600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:224925200-224928600	Weak transcription	Ovary	ovary
8	chr1:224925400-224932400	Weak transcription	Fetal Thymus	thymus
9	chr1:224925600-224928200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:224925600-224931800	Weak transcription	Brain Anterior Caudate	brain
11	chr1:224925800-224930800	Weak transcription	NHLF	lung
12	chr1:224926000-224928000	Weak transcription	Fetal Kidney	kidney
13	chr1:224926000-224934400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:224926200-224931600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:224926200-224932000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:224926200-224935000	Weak transcription	Left Ventricle	heart
17	chr1:224926200-224935200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:224926600-224931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:224927000-224928600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:224927000-224931000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:224927200-224928400	Flanking Active TSS	GM12878-XiMat	blood
22	chr1:224927200-224928400	Strong transcription	NHDF-Ad	bronchial
23	chr1:224927200-224928600	Strong transcription	Pancreas	Pancrea
24	chr1:224927200-224928600	Enhancers	Rectal Smooth Muscle	rectum
25	chr1:224927200-224929600	Strong transcription	Dnd41	blood
26	chr1:224927200-224930000	Strong transcription	NH-A	brain
27	chr1:224927400-224928000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:224927400-224928000	Enhancers	Osteobl	bone
29	chr1:224927400-224928600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:224927400-224928600	Enhancers	Fetal Brain Female	brain
31	chr1:224927400-224931000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:224927600-224928600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:224927600-224935400	Weak transcription	Right Atrium	heart
34	chr1:224927800-224931600	Weak transcription	H1 Cell Line	embryonic stem cell

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