Variant report

Variant	rs11585488
Chromosome Location	chr1:45617312-45617313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11211075	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs11211077	0.86[EUR][1000 genomes]
rs11211080	0.84[EUR][1000 genomes]
rs1143726	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1143727	0.86[EUR][1000 genomes]
rs1144866	0.86[EUR][1000 genomes]
rs1144867	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs1144870	0.86[EUR][1000 genomes]
rs1144871	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1152017	0.85[EUR][1000 genomes]
rs1152018	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1152020	0.86[EUR][1000 genomes]
rs1152022	0.86[EUR][1000 genomes]
rs11588448	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1226722	0.86[EUR][1000 genomes]
rs1226723	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1226727	0.86[EUR][1000 genomes]
rs1226728	0.84[EUR][1000 genomes]
rs1226736	0.81[EUR][1000 genomes]
rs1226740	0.81[EUR][1000 genomes]
rs1226749	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1226912	0.81[EUR][1000 genomes]
rs12750360	0.86[EUR][1000 genomes]
rs16832411	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs1698295	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1938302	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1938406	0.81[EUR][1000 genomes]
rs2883902	0.81[EUR][1000 genomes]
rs2997400	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3009973	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs3009976	0.81[EUR][1000 genomes]
rs3009978	0.81[EUR][1000 genomes]
rs3121731	0.93[CEU][hapmap]
rs6429558	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs6698681	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs6700502	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6702389	0.86[EUR][1000 genomes]
rs68139854	0.86[EUR][1000 genomes]
rs72684470	1.00[AFR][1000 genomes]
rs7517524	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7528468	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7548075	0.86[EUR][1000 genomes]
rs7552211	0.93[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
5	nsv546148	chr1:45500294-45627663	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45590000-45627000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:45611800-45617600	Weak transcription	Aorta	Aorta
3	chr1:45614000-45617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:45614400-45617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:45614600-45617800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:45614800-45617600	Weak transcription	Ovary	ovary
7	chr1:45614800-45617800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:45616200-45617800	Weak transcription	Brain Germinal Matrix	brain

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