Variant report

Variant	rs1158557
Chromosome Location	chr13:65335043-65335044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10507715	0.87[EUR][1000 genomes]
rs11839758	0.87[EUR][1000 genomes]
rs11840161	0.87[EUR][1000 genomes]
rs11842717	0.83[EUR][1000 genomes]
rs12586097	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390517	0.89[EUR][1000 genomes]
rs1496147	0.86[EUR][1000 genomes]
rs1496148	0.86[EUR][1000 genomes]
rs17089984	0.87[EUR][1000 genomes]
rs17090038	0.87[EUR][1000 genomes]
rs17090280	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1826792	0.88[EUR][1000 genomes]
rs2006947	0.87[EUR][1000 genomes]
rs2050560	0.87[EUR][1000 genomes]
rs2132464	0.89[EUR][1000 genomes]
rs2324721	0.87[EUR][1000 genomes]
rs2875418	0.87[EUR][1000 genomes]
rs4144393	0.90[EUR][1000 genomes]
rs4144394	0.90[EUR][1000 genomes]
rs4433690	0.90[EUR][1000 genomes]
rs61950065	0.87[EUR][1000 genomes]
rs61950066	0.87[EUR][1000 genomes]
rs61950067	0.87[EUR][1000 genomes]
rs61950093	0.89[EUR][1000 genomes]
rs61950094	0.90[EUR][1000 genomes]
rs61950095	0.82[AMR][1000 genomes]
rs61952265	0.82[EUR][1000 genomes]
rs61952266	0.82[EUR][1000 genomes]
rs61952268	0.82[EUR][1000 genomes]
rs6562367	0.85[EUR][1000 genomes]
rs6562370	0.89[EUR][1000 genomes]
rs7320529	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7322177	0.88[EUR][1000 genomes]
rs7330428	0.89[EUR][1000 genomes]
rs7334582	0.87[EUR][1000 genomes]
rs74090037	0.84[EUR][1000 genomes]
rs74090042	0.87[EUR][1000 genomes]
rs7983133	0.89[EUR][1000 genomes]
rs7992247	0.87[EUR][1000 genomes]
rs7993657	0.87[EUR][1000 genomes]
rs7994548	0.90[EUR][1000 genomes]
rs7994586	0.89[EUR][1000 genomes]
rs7995538	0.89[EUR][1000 genomes]
rs8001295	0.87[EUR][1000 genomes]
rs903807	0.90[EUR][1000 genomes]
rs9285251	0.87[EUR][1000 genomes]
rs9317441	0.87[EUR][1000 genomes]
rs9564185	0.85[EUR][1000 genomes]
rs9564186	0.85[EUR][1000 genomes]
rs9564189	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9564190	0.89[EUR][1000 genomes]
rs9564191	0.90[EUR][1000 genomes]
rs9564193	0.96[ASN][1000 genomes]
rs9571256	0.85[EUR][1000 genomes]
rs9571257	0.88[EUR][1000 genomes]
rs9571258	0.87[EUR][1000 genomes]
rs9571259	0.86[EUR][1000 genomes]
rs9571260	0.85[EUR][1000 genomes]
rs9571265	0.89[EUR][1000 genomes]
rs9571266	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9571267	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9571268	0.88[EUR][1000 genomes]
rs9571269	0.89[EUR][1000 genomes]
rs9571270	0.89[EUR][1000 genomes]
rs9571271	0.89[EUR][1000 genomes]
rs9571272	0.87[EUR][1000 genomes]
rs9571273	0.89[EUR][1000 genomes]
rs9571275	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1038150	chr13:65224379-65354892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1042755	chr13:65300441-65400043	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65331000-65335200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:65333400-65341200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:65333600-65335400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:65333600-65341000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:65333800-65340200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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