Variant report

Variant	rs17090038
Chromosome Location	chr13:65298015-65298016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10507715	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158557	0.87[EUR][1000 genomes]
rs11839758	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11840161	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11842717	0.94[EUR][1000 genomes]
rs12586097	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1390517	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1496147	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1496148	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17089984	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17090280	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1826792	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2006947	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050560	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132464	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2324721	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875418	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144393	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4144394	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4433690	0.97[EUR][1000 genomes]
rs61950065	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950066	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950093	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61950094	0.95[EUR][1000 genomes]
rs61952265	0.93[EUR][1000 genomes]
rs61952266	0.93[EUR][1000 genomes]
rs61952268	0.93[EUR][1000 genomes]
rs6562367	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6562370	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7320529	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7322177	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7322256	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7324521	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7330428	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334582	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090037	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74090042	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983133	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7992247	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993657	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994548	0.95[EUR][1000 genomes]
rs7994586	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7995538	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001295	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs903807	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9285251	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9317441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564185	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9564186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564189	0.91[EUR][1000 genomes]
rs9564190	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9564191	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9571256	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571257	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9571258	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571259	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9571260	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9571265	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571266	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9571267	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9571268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571269	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571270	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571271	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571272	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571273	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571275	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900359	chr13:65182365-65321033	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1038150	chr13:65224379-65354892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1044887	chr13:65257467-65315083	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1051377	chr13:65257467-65319336	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900362	chr13:65271533-65324829	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900363	chr13:65271533-65326034	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1818424	chr13:65283647-65308657	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65293600-65298400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:65296000-65298600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:65296800-65298400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:65296800-65298600	Enhancers	NHDF-Ad	bronchial
5	chr13:65297000-65298400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:65297000-65298600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:65297400-65298200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:65297400-65298200	Enhancers	Fetal Heart	heart
9	chr13:65297400-65298400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:65297400-65298400	Enhancers	Hela-S3	cervix
11	chr13:65297400-65298600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:65297400-65298600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:65297400-65298600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:65297400-65298600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:65297400-65298600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr13:65297400-65298600	Enhancers	HMEC	breast
17	chr13:65297400-65298600	Enhancers	NH-A	brain
18	chr13:65297400-65298600	Enhancers	NHEK	skin
19	chr13:65297800-65298200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:65297800-65298200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr13:65297800-65298200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:65297800-65298200	Active TSS	A549	lung
23	chr13:65297800-65298400	Enhancers	Fetal Lung	lung
24	chr13:65297800-65299200	Enhancers	HUVEC	blood vessel
25	chr13:65298000-65298400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr13:65298000-65298400	Enhancers	HUES6 Cell Line	embryonic stem cell

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