Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10747317	0.90[CHB][hapmap]
rs10782542	0.80[CHB][hapmap]
rs10782543	0.90[CHB][hapmap]
rs11161573	1.00[CHB][hapmap]
rs11161585	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs11161586	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11161588	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11161590	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs11161592	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11576939	1.00[CHB][hapmap]
rs11583827	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11587512	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11590047	0.88[ASN][1000 genomes]
rs12061305	0.84[ASN][1000 genomes]
rs12093484	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405767	1.00[CHB][hapmap]
rs12754032	0.88[ASN][1000 genomes]
rs17125445	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012099	0.96[ASN][1000 genomes]
rs34743622	0.88[ASN][1000 genomes]
rs4949927	1.00[CHB][hapmap]
rs4949928	1.00[CHB][hapmap]
rs57483398	0.84[ASN][1000 genomes]
rs61771982	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6668948	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6670921	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7554249	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9432848	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
2	chr1:85764400-85774000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:85765200-85773600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85765200-85773600	Weak transcription	HMEC	breast
5	chr1:85768200-85773600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:85768200-85773600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:85768400-85772600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:85768400-85773400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:85769200-85771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:85769200-85773600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:85769400-85773600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:85769400-85773800	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:85769400-85773800	Weak transcription	Fetal Stomach	stomach
14	chr1:85769600-85774200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:85769800-85773600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:85770400-85771000	Enhancers	NHDF-Ad	bronchial

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