Variant report

Variant	rs6670921
Chromosome Location	chr1:85755925-85755926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85719208..85720970-chr1:85755325..85757545,2	K562	blood:
2	chr1:85740925..85743894-chr1:85754039..85756993,2	MCF-7	breast:
3	chr1:85749527..85752168-chr1:85753646..85756237,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264380	Chromatin interaction
ENSG00000223653	Chromatin interaction
ENSG00000142867	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10747317	0.90[CHB][hapmap]
rs10782542	0.90[CHB][hapmap]
rs10782543	0.90[CHB][hapmap]
rs11161573	1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs11161585	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.98[ASN][1000 genomes]
rs11161586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11161588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11161592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11576939	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11580090	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11583827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11585614	0.86[ASN][1000 genomes]
rs11587512	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11590047	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12061305	0.85[ASN][1000 genomes]
rs12061512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12093484	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs12405767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12754032	0.98[ASN][1000 genomes]
rs17125445	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2012099	0.82[ASN][1000 genomes]
rs34743622	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4949927	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4949928	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57483398	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60325409	0.85[ASN][1000 genomes]
rs61771982	0.87[ASN][1000 genomes]
rs6668948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7554249	1.00[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9432848	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6670921	DDAH1	cis	cerebellum	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85742800-85763000	Weak transcription	Ovary	ovary
2	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
3	chr1:85748600-85764000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:85750000-85761400	Weak transcription	Lung	lung
5	chr1:85750000-85762800	Weak transcription	Pancreas	Pancrea
6	chr1:85750400-85762800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:85750800-85763800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:85752200-85762800	Weak transcription	Aorta	Aorta
9	chr1:85752400-85760600	Weak transcription	Fetal Stomach	stomach
10	chr1:85753600-85758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:85753600-85758600	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:85754000-85756600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:85754200-85758400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:85754400-85757600	Enhancers	NHDF-Ad	bronchial
15	chr1:85754400-85757800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:85755000-85756000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:85755000-85756200	Enhancers	HUVEC	blood vessel
18	chr1:85755000-85756400	Enhancers	Hela-S3	cervix
19	chr1:85755000-85757400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:85755000-85757600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:85755000-85757600	Enhancers	Osteobl	bone
22	chr1:85755000-85757800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:85755000-85757800	Enhancers	NH-A	brain
24	chr1:85755000-85758400	Enhancers	NHLF	lung
25	chr1:85755200-85756400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr1:85755200-85756600	Enhancers	HSMMtube	muscle
27	chr1:85755200-85756800	Enhancers	Fetal Heart	heart
28	chr1:85755200-85757000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:85755200-85757800	Enhancers	HSMM	muscle
30	chr1:85755400-85756000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:85755400-85756000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr1:85755400-85756000	Flanking Active TSS	HMEC	breast
33	chr1:85755400-85756000	Flanking Active TSS	NHEK	skin
34	chr1:85755400-85756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:85755400-85757800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:85755600-85756000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:85755600-85756200	Enhancers	Primary hematopoietic stem cells	blood
38	chr1:85755600-85756200	Enhancers	A549	lung
39	chr1:85755600-85756400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:85755800-85756000	Enhancers	Esophagus	oesophagus
41	chr1:85755800-85756200	Enhancers	GM12878-XiMat	blood
42	chr1:85755800-85756400	Enhancers	Stomach Mucosa	stomach
43	chr1:85755800-85758400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:85755800-85763200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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