Variant report

Variant	rs1158910
Chromosome Location	chr1:114527968-114527969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114526776..114528757-chr20:45985728..45987939,2	MCF-7	breast:
2	chr1:114527758..114530714-chr1:114543919..114546492,2	MCF-7	breast:
3	chr1:114527463..114529222-chr1:114530804..114533852,3	MCF-7	breast:
4	chr1:114525871..114528123-chr1:114528242..114530523,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270780	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11102712	0.86[ASN][1000 genomes]
rs1158911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1158912	0.90[ASN][1000 genomes]
rs12029644	0.86[ASN][1000 genomes]
rs1354373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17032048	0.90[ASN][1000 genomes]
rs1806736	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1806763	0.89[ASN][1000 genomes]
rs2358997	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2358998	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2884604	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2938319	0.88[ASN][1000 genomes]
rs2938320	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3006981	0.88[ASN][1000 genomes]
rs3006988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006989	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006996	0.88[ASN][1000 genomes]
rs3006998	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3006999	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3007002	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7520320	0.87[ASN][1000 genomes]
rs924778	0.89[ASN][1000 genomes]
rs937672	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114523800-114534600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:114524400-114528000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:114524800-114528000	Flanking Active TSS	Fetal Muscle Leg	muscle
4	chr1:114525000-114528000	Enhancers	Lung	lung
5	chr1:114525600-114528000	Enhancers	Left Ventricle	heart
6	chr1:114525600-114528000	Enhancers	Right Atrium	heart
7	chr1:114525600-114528200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:114525800-114528000	Enhancers	Ovary	ovary
9	chr1:114526000-114528000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:114526200-114529600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:114526400-114528000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:114526400-114528000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr1:114526600-114529400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:114526800-114528000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:114526800-114528000	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:114526800-114528400	Genic enhancers	Fetal Stomach	stomach
17	chr1:114527000-114528400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr1:114527200-114528000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr1:114527200-114528000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:114527200-114528000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:114527200-114528000	Enhancers	Colon Smooth Muscle	Colon
22	chr1:114527200-114528000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:114527200-114528200	Flanking Active TSS	Fetal Muscle Trunk	muscle
24	chr1:114527200-114530000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:114527400-114528000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:114527600-114528000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:114527600-114528000	Bivalent Enhancer	Placenta	Placenta
28	chr1:114527600-114528000	Flanking Active TSS	HSMM	muscle
29	chr1:114527800-114528000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
30	chr1:114527800-114528000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:114527800-114528000	Enhancers	Brain Cingulate Gyrus	brain
32	chr1:114527800-114528000	Enhancers	Fetal Intestine Large	intestine
33	chr1:114527800-114528000	Enhancers	HUVEC	blood vessel
34	chr1:114527800-114528200	Enhancers	Fetal Lung	lung
35	chr1:114527800-114528200	Enhancers	Stomach Smooth Muscle	stomach
36	chr1:114527800-114528600	Weak transcription	Fetal Intestine Small	intestine
37	chr1:114527800-114529800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:114527800-114533000	Weak transcription	HSMMtube	muscle

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