Variant report

Variant	rs11592098
Chromosome Location	chr10:97210983-97210984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97210894..97213718-chr10:97224956..97226923,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11597175	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17534496	0.89[CHB][hapmap]
rs2182588	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918940	0.82[JPT][hapmap]
rs7100620	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11592098	SORBS1,KIAA0894	cis	temporal cortex	BrainEAC
rs11592098	FRAT2	cis	cerebellum	SCAN
rs11592098	AVPI1	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97205200-97211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:97206000-97217000	Weak transcription	Gastric	stomach
3	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
4	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97206600-97211000	Weak transcription	Fetal Intestine Large	intestine
6	chr10:97206600-97211400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:97208000-97211000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:97208200-97216200	Weak transcription	Lung	lung
10	chr10:97208200-97219000	Weak transcription	Ovary	ovary
11	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
12	chr10:97208400-97211000	Weak transcription	Brain Angular Gyrus	brain
13	chr10:97208400-97211200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:97208600-97211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:97208600-97211000	Weak transcription	NHEK	skin
16	chr10:97208600-97211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:97208600-97212200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:97208800-97211000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:97208800-97215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:97208800-97215800	Weak transcription	Fetal Kidney	kidney
22	chr10:97209200-97211000	Weak transcription	Left Ventricle	heart
23	chr10:97209200-97215600	Weak transcription	Right Ventricle	heart
24	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97209800-97211000	Enhancers	HepG2	liver
26	chr10:97209800-97213000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97210000-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
29	chr10:97210200-97211200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:97210200-97211800	Enhancers	Psoas Muscle	Psoas
31	chr10:97210400-97211000	Weak transcription	Aorta	Aorta
32	chr10:97210600-97211600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr10:97210600-97212200	Enhancers	Fetal Stomach	stomach
34	chr10:97210800-97211000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:97210800-97211000	Flanking Active TSS	Fetal Heart	heart
36	chr10:97210800-97211000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr10:97210800-97211200	Enhancers	Brain Hippocampus Middle	brain
38	chr10:97210800-97211200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97210800-97211200	Enhancers	Right Atrium	heart
40	chr10:97210800-97211400	Enhancers	Fetal Brain Female	brain
41	chr10:97210800-97211400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr10:97210800-97211400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr10:97210800-97211800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:97210800-97211800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:97210800-97211800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97210800-97211800	Enhancers	Brain Anterior Caudate	brain
47	chr10:97210800-97211800	Enhancers	Fetal Muscle Leg	muscle
48	chr10:97210800-97212200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:97210800-97212200	Enhancers	Liver	Liver
50	chr10:97210800-97212200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links