Variant report

Variant	rs4918940
Chromosome Location	chr10:97253760-97253761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr10:97253077-97253992	K562	blood:	n/a	n/a
2	MYC	chr10:97253073-97253766	K562	blood:	n/a	chr10:97253397-97253406 chr10:97253395-97253406 chr10:97253395-97253406 chr10:97253396-97253405 chr10:97253394-97253409 chr10:97253395-97253404 chr10:97253395-97253406 chr10:97253392-97253407 chr10:97253395-97253405 chr10:97253394-97253407 chr10:97253394-97253407 chr10:97253396-97253406 chr10:97253394-97253404 chr10:97253396-97253403
3	JUN	chr10:97252901-97253792	K562	blood:	n/a	chr10:97253301-97253311 chr10:97253302-97253311 chr10:97253301-97253311 chr10:97253301-97253311 chr10:97253301-97253311

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509690	0.95[GIH][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap]
rs11592098	0.82[JPT][hapmap]
rs11597175	0.82[JPT][hapmap]
rs17536344	0.85[LWK][hapmap]
rs45572141	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55941659	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs725926	0.95[GIH][hapmap];0.87[LWK][hapmap];0.81[MEX][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4918940	DNTT	cis	parietal	SCAN
rs4918940	LGI1	cis	parietal	SCAN
rs4918940	CYP26A1	cis	cerebellum	SCAN
rs4918940	C10orf62	cis	parietal	SCAN
rs4918940	FRAT2	cis	cerebellum	SCAN
rs4918940	C10orf131	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97241600-97254000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
6	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
7	chr10:97241800-97256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:97242000-97253800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:97242000-97256400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:97242800-97256000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
12	chr10:97245400-97264600	Weak transcription	Ovary	ovary
13	chr10:97245800-97254000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:97246200-97256600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:97246400-97256000	Weak transcription	HSMMtube	muscle
17	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
19	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
20	chr10:97250000-97258800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97251200-97254000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:97252200-97253800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:97252200-97254200	Enhancers	Stomach Mucosa	stomach
25	chr10:97252200-97254400	Enhancers	Right Ventricle	heart
26	chr10:97252200-97254600	Enhancers	Brain Angular Gyrus	brain
27	chr10:97252200-97254600	Enhancers	Gastric	stomach
28	chr10:97252200-97254600	Enhancers	Pancreas	Pancrea
29	chr10:97252200-97255600	Enhancers	Fetal Heart	heart
30	chr10:97252200-97255600	Enhancers	Left Ventricle	heart
31	chr10:97252400-97254400	Enhancers	Right Atrium	heart
32	chr10:97252400-97254400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:97252400-97254600	Enhancers	Psoas Muscle	Psoas
34	chr10:97252400-97254600	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr10:97252400-97255200	Enhancers	K562	blood
36	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
37	chr10:97252600-97253800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:97252600-97253800	Enhancers	HUVEC	blood vessel
39	chr10:97252600-97254800	Enhancers	Colon Smooth Muscle	Colon
40	chr10:97252600-97259200	Weak transcription	Liver	Liver
41	chr10:97253000-97254400	Genic enhancers	Fetal Intestine Small	intestine
42	chr10:97253200-97254200	Enhancers	Fetal Intestine Large	intestine
43	chr10:97253200-97254400	Enhancers	Lung	lung
44	chr10:97253200-97254400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr10:97253200-97254600	Enhancers	Rectal Smooth Muscle	rectum
46	chr10:97253200-97254800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:97253400-97253800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:97253400-97254200	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr10:97253400-97254200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:97253400-97254400	Enhancers	Duodenum Mucosa	Duodenum

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