Variant report

Variant	rs55941659
Chromosome Location	chr10:97256930-97256931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr10:97256817-97257045	K562	blood:	n/a	chr10:97257029-97257042
2	CEBPB	chr10:97256797-97257020	H1-hESC	embryonic stem cell:	n/a	n/a
3	EGR1	chr10:97256841-97257024	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97255064..97257617-chr10:97271622..97273423,2	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

rs_ID	r²[population]
rs10509690	0.87[AMR][1000 genomes]
rs17536344	0.82[AFR][1000 genomes]
rs45572141	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4918940	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61868706	0.82[AMR][1000 genomes]
rs61869973	0.81[AFR][1000 genomes]
rs61869974	0.81[AFR][1000 genomes]
rs61869975	0.81[AFR][1000 genomes]
rs61869976	0.81[AFR][1000 genomes]
rs725926	0.87[AMR][1000 genomes]

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
4	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
5	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97245400-97264600	Weak transcription	Ovary	ovary
7	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
10	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
11	chr10:97250000-97258800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
14	chr10:97252600-97259200	Weak transcription	Liver	Liver
15	chr10:97253400-97261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:97253800-97257800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97253800-97258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:97253800-97258400	Weak transcription	HUVEC	blood vessel
19	chr10:97253800-97258800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:97254200-97257000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:97254200-97257600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:97254200-97259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97254200-97261000	Weak transcription	Stomach Mucosa	stomach
25	chr10:97254400-97257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:97254400-97258000	Weak transcription	HepG2	liver
27	chr10:97254400-97259200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:97254400-97259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:97254400-97259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:97254400-97259400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:97254400-97259800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:97254400-97259800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:97254400-97259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:97254400-97260000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:97254400-97260600	Weak transcription	Fetal Intestine Small	intestine
36	chr10:97254400-97261800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:97254600-97257200	Weak transcription	Gastric	stomach
38	chr10:97254600-97257200	Weak transcription	Psoas Muscle	Psoas
39	chr10:97254600-97258800	Weak transcription	Aorta	Aorta
40	chr10:97254600-97259000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:97254600-97259400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:97254600-97259400	Weak transcription	Brain Angular Gyrus	brain
43	chr10:97255200-97259400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:97255600-97259800	Weak transcription	Fetal Heart	heart
45	chr10:97256000-97257400	Enhancers	Fetal Muscle Leg	muscle
46	chr10:97256000-97257600	Enhancers	HSMMtube	muscle
47	chr10:97256000-97258400	Enhancers	K562	blood
48	chr10:97256200-97257000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:97256400-97257200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:97256400-97257200	Enhancers	Brain Inferior Temporal Lobe	brain

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